Gm5937 Pseudogene Detail

Summary

• Symbol
  Gm5937
• Name
  predicted gene 5937

• Feature Type
  pseudogene
• IDs
  MGI:3648844
  NCBI Gene: 546331
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:76500192-76500834 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648844	pseudogene	ChrX:76500089-76500834 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012694	pseudogene	Chr4:66647121-66647760 (-)
A/J	MGP_AJ_G0012680	pseudogene	Chr4:64292875-64293501 (-)
AKR/J	MGP_AKRJ_G0012652	pseudogene	Chr4:65975008-65975634 (-)
BALB/cJ	MGP_BALBcJ_G0012663	pseudogene	Chr4:64466258-64466884 (-)
C3H/HeJ	MGP_C3HHeJ_G0012523	pseudogene	Chr4:66566016-66566642 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012991	pseudogene	Chr4:68924400-68925026 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012279	pseudogene	Chr4:64469410-64470035 (-)
CBA/J	MGP_CBAJ_G0012500	pseudogene	Chr4:71253407-71254033 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012562	pseudogene	Chr4:63292266-63292892 (-)
LP/J	MGP_LPJ_G0012633	pseudogene	Chr4:66929178-66929817 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012570	pseudogene	Chr4:74589585-74590211 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012996	pseudogene	Chr4:66101035-66101661 (-)
PWK/PhJ	MGP_PWKPhJ_G0012105	pseudogene	Chr4:62593551-62594190 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011919	pseudogene	Chr4:63591908-63592524 (-)
WSB/EiJ	MGP_WSBEiJ_G0012301	pseudogene	Chr4:66163476-66164102 (-)

Homology

• Gene Tree
  Gm5937
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000081622 (Evidence)
• NCBI Gene
  546331

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081622	Ensembl Gene Model | MGI Sequence Detail	643	C57BL/6J
transcript	ENSMUST00000119715	Ensembl | MGI Sequence Detail	643	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;