Gm5468 Gene Detail

Summary

• Symbol
  Gm5468
• Name
  predicted gene 5468
• Synonyms
  100040583, Gm48957

• Feature Type
  lncRNA gene
• IDs
  MGI:3648948
  NCBI Gene: 432939
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:25414276-25481434 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2283 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648948	lncRNA gene	Chr15:25414242-25481434 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021749	protein coding gene	Chr15:23400560-23401212 (+)
A/J	MGP_AJ_G0021709	protein coding gene	Chr15:22518908-22519560 (+)
AKR/J	MGP_AKRJ_G0021687	protein coding gene	Chr15:23005600-23006252 (+)
BALB/cJ	MGP_BALBcJ_G0021716	protein coding gene	Chr15:22499936-22500588 (+)
C3H/HeJ	MGP_C3HHeJ_G0021492	protein coding gene	Chr15:23045554-23046206 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022155	protein coding gene	Chr15:24408010-24408662 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019695	protein coding gene	Chr15:20832192-20832844 (+)
CAST/EiJ	MGP_CASTEiJ_G0021008	protein coding gene	Chr15:23386844-23387496 (+)
CBA/J	MGP_CBAJ_G0021461	protein coding gene	Chr15:25196693-25197345 (+)
DBA/2J	MGP_DBA2J_G0021585	protein coding gene	Chr15:22279531-22280183 (+)
FVB/NJ	MGP_FVBNJ_G0021563	protein coding gene	Chr15:21844255-21844907 (+)
LP/J	MGP_LPJ_G0021653	protein coding gene	Chr15:23269216-23269868 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021588	protein coding gene	Chr15:27901054-27901706 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022178	protein coding gene	Chr15:23202867-23203519 (+)
PWK/PhJ	MGP_PWKPhJ_G0020751	protein coding gene	Chr15:22415123-22415775 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020589	protein coding gene	Chr15:22992813-22993463 (+)
WSB/EiJ	MGP_WSBEiJ_G0021064	protein coding gene	Chr15:23200629-23201238 (+)

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  9
• UniProt
  1

• Ensembl
  ENSMUSG00000056089 (Evidence), ENSMUSG00000115729 (Evidence)
• NCBI Gene
  432939

Representative Sequences			Length	Strain/Species
genomic	432939	NCBI Gene Model | MGI Sequence Detail	67159	C57BL/6J
transcript	NR_027376	RefSeq | MGI Sequence Detail	2882	C57BL/6
polypeptide	Q8C3D3	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:3781024, MGI:6118287

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm5468:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130802	Chr15:25414261-25414283 (+)	-4 bp
Tssr130803	Chr15:25414391-25414402 (+)	121 bp
Tssr4562	Chr15:25426112-25426113 (+)	11,837 bp