Gm6427 Pseudogene Detail

Summary

• Symbol
  Gm6427
• Name
  predicted gene 6427

• Feature Type
  pseudogene
• IDs
  MGI:3649064
  NCBI Gene: 623412
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:111700839-111701817 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 48.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649064	pseudogene	ChrX:111700800-111701821 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014743	pseudogene	ChrX:109546440-109547418 (+)
A/J	MGP_AJ_G0014747	pseudogene	ChrX:109367883-109368863 (+)
AKR/J	MGP_AKRJ_G0014679	pseudogene	ChrX:112791179-112792157 (+)
BALB/cJ	MGP_BALBcJ_G0014697	pseudogene	ChrX:108000632-108001612 (+)
C3H/HeJ	MGP_C3HHeJ_G0014529	pseudogene	ChrX:109968650-109969630 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015182	pseudogene	ChrX:112764939-112765917 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012850	pseudogene	ChrX:106053265-106054244 (+)
CAST/EiJ	MGP_CASTEiJ_G0014149	pseudogene	ChrX:93873571-93874549 (+)
CBA/J	MGP_CBAJ_G0014521	pseudogene	ChrX:116285296-116286276 (+)
DBA/2J	MGP_DBA2J_G0014605	pseudogene	ChrX:108566886-108567864 (+)
FVB/NJ	MGP_FVBNJ_G0014584	pseudogene	ChrX:107960202-107961180 (+)
LP/J	MGP_LPJ_G0014698	pseudogene	ChrX:110412598-110413576 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014632	pseudogene	ChrX:121668458-121669436 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015151	pseudogene	ChrX:109077520-109078498 (+)
PWK/PhJ	MGP_PWKPhJ_G0013952	pseudogene	ChrX:91348892-91349872 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013749	pseudogene	ChrX:94688375-94689340 (+)
WSB/EiJ	MGP_WSBEiJ_G0014230	pseudogene	ChrX:107883826-107884804 (+)

Homology

• Gene Tree
  Gm6427
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081555 (Evidence)
• NCBI Gene
  623412

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081555	Ensembl Gene Model | MGI Sequence Detail	979	C57BL/6J
transcript	ENSMUST00000118721	Ensembl | MGI Sequence Detail	979	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;