Gm8885 Pseudogene Detail

Summary

• Symbol
  Gm8885
• Name
  predicted gene 8885

• Feature Type
  pseudogene
• IDs
  MGI:3649121
  NCBI Gene: 667937
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:72127016-72127613 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 36.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649121	pseudogene	Chr1:72127015-72127613 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010202	pseudogene	Chr1:72568652-72569202 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0010168	pseudogene	Chr1:72000708-72003510 (+)
BALB/cJ	MGP_BALBcJ_G0010173	pseudogene	Chr1:70113993-70115072 (+)
C3H/HeJ	MGP_C3HHeJ_G0010110	pseudogene	Chr1:72318090-72318736 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010079	pseudogene	Chr1:77848385-77853212 (+)
DBA/2J	MGP_DBA2J_G0010106	pseudogene	Chr1:69383490-69384087 (+)
FVB/NJ	MGP_FVBNJ_G0010126	pseudogene	Chr1:68567530-68568030 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010087	pseudogene	Chr1:81339207-81340418 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010404	pseudogene	Chr1:72000987-72001484 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8885
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm8885
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000101496 (Evidence)
• NCBI Gene
  667937

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101496	Ensembl Gene Model | MGI Sequence Detail	598	C57BL/6J
transcript	ENSMUST00000189382	Ensembl | MGI Sequence Detail	598	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm8885:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7292	Chr1:72126975-72126979 (+)	-39 bp