Gm13740 Pseudogene Detail

Summary

• Symbol
  Gm13740
• Name
  predicted gene 13740

• Feature Type
  pseudogene
• IDs
  MGI:3649209
  NCBI Gene: 100042038
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:87377237-87377546 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.86 cM

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649209	pseudogene	Chr2:87377237-87377546 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011752	pseudogene	Chr2:88607147-88607439 (-)
A/J	MGP_AJ_G0011746	pseudogene	Chr2:85055939-85056231 (-)
AKR/J	MGP_AKRJ_G0011713	pseudogene	Chr2:87393000-87393292 (-)
BALB/cJ	MGP_BALBcJ_G0011725	pseudogene	Chr2:85254112-85254404 (-)
C3H/HeJ	MGP_C3HHeJ_G0011610	pseudogene	Chr2:87620795-87621087 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012022	pseudogene	Chr2:91530548-91530840 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011398	pseudogene	Chr2:88092840-88093128 (-)
CBA/J	MGP_CBAJ_G0011585	pseudogene	Chr2:94593094-94593386 (-)
DBA/2J	MGP_DBA2J_G0011637	pseudogene	Chr2:84650505-84650797 (-)
FVB/NJ	MGP_FVBNJ_G0011642	pseudogene	Chr2:83761850-83762142 (-)
LP/J	MGP_LPJ_G0011708	pseudogene	Chr2:88632512-88632804 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011644	pseudogene	Chr2:97397233-97397525 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012018	pseudogene	Chr2:87521687-87521979 (-)
PWK/PhJ	MGP_PWKPhJ_G0011250	pseudogene	Chr2:84575084-84575376 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011074	pseudogene	Chr2:87540930-87541225 (-)
WSB/EiJ	MGP_WSBEiJ_G0011424	pseudogene	Chr2:88232894-88233186 (-)

Homology

• Gene Tree
  Gm13740
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13740
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000082417 (Evidence)
• NCBI Gene
  100042038

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082417	Ensembl Gene Model | MGI Sequence Detail	310	C57BL/6J
transcript	ENSMUST00000120590	Ensembl | MGI Sequence Detail	310	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087