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Rpl9-ps1 Pseudogene Detail
Summary
  • Symbol
    Rpl9-ps1
  • Name
    ribosomal protein L9, pseudogene 1
  • Synonyms
    Gm11436
  • Feature Type
    pseudogene
  • IDs
    MGI:3649210
    NCBI Gene: 194905
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr11:83535872-83536447 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 51.03 cM
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649210
 pseudogene Chr11:83535777-83536467 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018855
 protein coding gene Chr11:85009047-85009622 (-)
A/J MGP_AJ_G0018822
 protein coding gene Chr11:81757571-81758146 (-)
AKR/J MGP_AKRJ_G0018792
 protein coding gene Chr11:84195844-84196419 (-)
BALB/cJ MGP_BALBcJ_G0018795
 protein coding gene Chr11:82174491-82175066 (-)
C3H/HeJ MGP_C3HHeJ_G0018609
 protein coding gene Chr11:84257292-84257867 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019247
 protein coding gene Chr11:87595751-87596326 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0018164
 protein coding gene Chr11:84835087-84835663 (-)
CBA/J MGP_CBAJ_G0018580
 protein coding gene Chr11:91360368-91360943 (-)
DBA/2J MGP_DBA2J_G0018688
 protein coding gene Chr11:81355985-81356560 (-)
FVB/NJ MGP_FVBNJ_G0018677
 protein coding gene Chr11:80842621-80843196 (-)
LP/J MGP_LPJ_G0018758
 protein coding gene Chr11:85550655-85551230 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018704
 protein coding gene Chr11:91529252-91529827 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019287
 protein coding gene Chr11:84475640-84476215 (-)
PWK/PhJ MGP_PWKPhJ_G0017933
 protein coding gene Chr11:82115301-82115877 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017725
 protein coding gene Chr11:83998930-83999506 (-)
WSB/EiJ MGP_WSBEiJ_G0018215
 protein coding gene Chr11:84327741-84328316 (-)



Homology
more
  • Human Ortholog
    RPL9, ribosomal protein L9
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPL9, ribosomal protein L9
  • Synonyms
    L9, NPC-A-16, uL6
  • Links
    NCBI Gene ID: 6133
    neXtProt AC: NX_P32969
    UniProt: P32969

  • Chr Location
    4p14; chr4:39452587-39458931 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000081906 Ensembl Gene Model | MGI Sequence Detail 576 C57BL/6J ±  kb
transcript ENSMUST00000117199 Ensembl | MGI Sequence Detail 576 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 10
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory