Gm11657 Gene Detail

Summary

• Symbol
  Gm11657
• Name
  predicted gene 11657

• Feature Type
  lncRNA gene
• IDs
  MGI:3649241
  NCBI Gene: 118567874
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:107884848-107885457 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 71.47 cM

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649241	lncRNA gene	Chr11:107884771-107890537 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003088	antisense lncRNA gene	Chr11:111438524-111439135 (+)
A/J	MGP_AJ_G0003066	antisense lncRNA gene	Chr11:106650747-106651357 (+)
AKR/J	MGP_AKRJ_G0003047	antisense lncRNA gene	Chr11:109843034-109843641 (+)
BALB/cJ	MGP_BALBcJ_G0003053	antisense lncRNA gene	Chr11:107076066-107076746 (+)
C3H/HeJ	MGP_C3HHeJ_G0003009	antisense lncRNA gene	Chr11:110155819-110156194 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003195	antisense lncRNA gene	Chr11:114854114-114854721 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002731	antisense lncRNA gene	Chr11:103921381-103921984 (+)
CAST/EiJ	MGP_CASTEiJ_G0002978	antisense lncRNA gene	Chr11:111259449-111260058 (+)
CBA/J	MGP_CBAJ_G0003006	antisense lncRNA gene	Chr11:119608522-119609133 (+)
DBA/2J	MGP_DBA2J_G0003011	antisense lncRNA gene	Chr11:106131130-106131740 (+)
FVB/NJ	MGP_FVBNJ_G0003031	antisense lncRNA gene	Chr11:105638840-105639434 (+)
LP/J	MGP_LPJ_G0003086	antisense lncRNA gene	Chr11:111876706-111877313 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003019	antisense lncRNA gene	Chr11:118809322-118809931 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003199	antisense lncRNA gene	Chr11:110397997-110398638 (+)
PWK/PhJ	MGP_PWKPhJ_G0002936	antisense lncRNA gene	Chr11:107279385-107280850 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002880	antisense lncRNA gene	Chr11:110153244-110153834 (+)
WSB/EiJ	MGP_WSBEiJ_G0003008	antisense lncRNA gene	Chr11:110340023-110340635 (+)

Homology

• Gene Tree
  Gm11657
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000086078 (Evidence)
• NCBI Gene
  118567874

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086078	Ensembl Gene Model | MGI Sequence Detail	610	C57BL/6J
transcript	ENSMUST00000137175	Ensembl | MGI Sequence Detail	337	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm11657:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105597	Chr11:107884809-107884818 (+)	-34 bp
Tssr105598	Chr11:107884832-107884851 (+)	-6 bp