Rpsa-ps11 Pseudogene Detail

Summary

• Symbol
  Rpsa-ps11
• Name
  ribosomal protein SA, pseudogene 11
• Synonyms
  Gm12595

• Feature Type
  pseudogene
• IDs
  MGI:3649246
  NCBI Gene: 433712
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:59162268-59163156 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 32.42 cM

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649246	pseudogene	Chr4:59162205-59163231 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012979	pseudogene	Chr4:60086388-60087276 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0012982	pseudogene	Chr4:57562197-57563085 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpsa-ps11
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• Ensembl
  ENSMUSG00000082978 (Evidence)
• NCBI Gene
  433712

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082978	Ensembl Gene Model | MGI Sequence Detail	889	C57BL/6J
transcript	ENSMUST00000118446	Ensembl | MGI Sequence Detail	889	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;