Gm12851 Pseudogene Detail

Summary

• Symbol
  Gm12851
• Name
  predicted gene 12851

• Feature Type
  pseudogene
• IDs
  MGI:3649254
  NCBI Gene: 102639194
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:98743851-98744271 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.60 cM

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649254	pseudogene	Chr4:98740981-98744300 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012765	pseudogene	Chr4:95603193-95603612 (+)
AKR/J	MGP_AKRJ_G0012735	pseudogene	Chr4:97923592-97924011 (+)
BALB/cJ	MGP_BALBcJ_G0012746	pseudogene	Chr4:95849244-95849663 (+)
C3H/HeJ	MGP_C3HHeJ_G0012603	pseudogene	Chr4:98721715-98722134 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013077	pseudogene	Chr4:102815292-102815712 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012579	pseudogene	Chr4:105931473-105931892 (+)
DBA/2J	MGP_DBA2J_G0012641	pseudogene	Chr4:95348050-95348469 (+)
FVB/NJ	MGP_FVBNJ_G0012645	pseudogene	Chr4:94190294-94190713 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013085	pseudogene	Chr4:98167994-98168413 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12851
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12851
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000084188 (Evidence)
• NCBI Gene
  102639194

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084188	Ensembl Gene Model | MGI Sequence Detail	421	C57BL/6J
transcript	ENSMUST00000117920	Ensembl | MGI Sequence Detail	421	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;