Gm12440 Gene Detail

Summary

• Symbol
  Gm12440
• Name
  predicted gene 12440

• Feature Type
  lncRNA gene
• IDs
  MGI:3649266
  NCBI Gene: 102634753
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:98957138-98961058 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 43.03 cM

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649266	lncRNA gene	Chr3:98957138-98961060 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006254	lincRNA gene	Chr3:100107334-100111256 (+)
A/J	MGP_AJ_G0006247	lincRNA gene	Chr3:96919889-96923934 (+)
AKR/J	MGP_AKRJ_G0006223	lincRNA gene	Chr3:99245410-99249332 (+)
BALB/cJ	MGP_BALBcJ_G0006221	lincRNA gene	Chr3:96721068-96724990 (+)
C3H/HeJ	MGP_C3HHeJ_G0006173	lincRNA gene	Chr3:99606684-99610606 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006386	lincRNA gene	Chr3:103810547-103814469 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005685	lincRNA gene	Chr3:93213492-93217430 (+)
CAST/EiJ	MGP_CASTEiJ_G0006107	lincRNA gene	Chr3:98734292-98738222 (+)
CBA/J	MGP_CBAJ_G0006157	lincRNA gene	Chr3:107488637-107492559 (+)
DBA/2J	MGP_DBA2J_G0006178	lincRNA gene	Chr3:96209208-96213132 (+)
FVB/NJ	MGP_FVBNJ_G0006199	lincRNA gene	Chr3:94155307-94159707 (+)
LP/J	MGP_LPJ_G0006259	lincRNA gene	Chr3:101474403-101478325 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006190	lincRNA gene	Chr3:113595218-113599172 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006392	lincRNA gene	Chr3:98809664-98813586 (+)
PWK/PhJ	MGP_PWKPhJ_G0006047	lincRNA gene	Chr3:95972606-95976523 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005958	lincRNA gene	Chr3:96912977-96917159 (+)
WSB/EiJ	MGP_WSBEiJ_G0006154	lincRNA gene	Chr3:99369265-99375710 (+)

Homology

• Gene Tree
  Gm12440
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12440
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086833 (Evidence)
• NCBI Gene
  102634753

Representative Sequences			Length	Strain/Species
genomic	102634753	NCBI Gene Model | MGI Sequence Detail	3921	C57BL/6J
transcript	NR_110516	RefSeq | MGI Sequence Detail	1068	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426