Gm13599 Gene Detail

Summary

• Symbol
  Gm13599
• Name
  predicted gene 13599

• Feature Type
  lncRNA gene
• IDs
  MGI:3649283
  NCBI Gene: 102639471
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:67140003-67226835 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 39.31 cM

Strain
Comparison

• SNPs within 2kb
  2790 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649283	lncRNA gene	Chr2:67139981-67230046 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003576	antisense lncRNA gene	Chr2:67178089-67268723 (-)
A/J	MGP_AJ_G0003557	antisense lncRNA gene	Chr2:64578696-64667052 (-)
AKR/J	MGP_AKRJ_G0003535	antisense lncRNA gene	Chr2:66331181-66422831 (-)
BALB/cJ	MGP_BALBcJ_G0003546	antisense lncRNA gene	Chr2:64775693-64870541 (-)
C3H/HeJ	MGP_C3HHeJ_G0003493	antisense lncRNA gene	Chr2:66528473-66629464 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003684	antisense lncRNA gene	Chr2:69179508-69263037 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003193	antisense lncRNA gene	Chr2:61889690-61965398 (-)
CAST/EiJ	MGP_CASTEiJ_G0003456	antisense lncRNA gene	Chr2:66640492-66722945 (-)
CBA/J	MGP_CBAJ_G0003490	antisense lncRNA gene	Chr2:71760842-71859602 (-)
DBA/2J	MGP_DBA2J_G0003498	antisense lncRNA gene	Chr2:64240446-64323681 (-)
FVB/NJ	MGP_FVBNJ_G0003518	antisense lncRNA gene	Chr2:63632725-63714494 (-)
LP/J	MGP_LPJ_G0003571	antisense lncRNA gene	Chr2:67027798-67119978 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003506	antisense lncRNA gene	Chr2:73786098-73895686 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003687	antisense lncRNA gene	Chr2:66402306-66488185 (-)
PWK/PhJ	MGP_PWKPhJ_G0003411	antisense lncRNA gene	Chr2:64047913-64133982 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003356	antisense lncRNA gene	Chr2:66594002-66680150 (-)
WSB/EiJ	MGP_WSBEiJ_G0003491	antisense lncRNA gene	Chr2:66811606-66900467 (-)

Homology

• Gene Tree
  Gm13599
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13599
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087043 (Evidence)
• NCBI Gene
  102639471

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087043	Ensembl Gene Model | MGI Sequence Detail	86833	C57BL/6J
transcript	ENSMUST00000134476	Ensembl | MGI Sequence Detail	678	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;