Gm13033 Pseudogene Detail

Summary

• Symbol
  Gm13033
• Name
  predicted gene 13033

• Feature Type
  pseudogene
• IDs
  MGI:3649305
  NCBI Gene: 100038703
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:132612084-132613727 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 66.01 cM

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	no annotation
129S1/SvImJ	MGP_129S1SvImJ_G0012894	pseudogene	Chr4:135089858-135091721 (+)
A/J	MGP_AJ_G0012880	pseudogene	Chr4:129456768-129458631 (+)
AKR/J	MGP_AKRJ_G0012850	pseudogene	Chr4:133104299-133106168 (+)
BALB/cJ	MGP_BALBcJ_G0012856	pseudogene	Chr4:130071341-130073204 (+)
C3H/HeJ	MGP_C3HHeJ_G0012716	pseudogene	Chr4:133363905-133365768 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013197	pseudogene	Chr4:139949214-139951077 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011443	pseudogene	Chr4:122527656-122529532 (+)
CAST/EiJ	MGP_CASTEiJ_G0012461	pseudogene	Chr4:131444909-131446767 (+)
CBA/J	MGP_CBAJ_G0012687	pseudogene	Chr4:143541185-143543048 (+)
DBA/2J	MGP_DBA2J_G0012754	pseudogene	Chr4:129872408-129874271 (+)
FVB/NJ	MGP_FVBNJ_G0012758	pseudogene	Chr4:128737629-128739492 (+)
LP/J	MGP_LPJ_G0012828	pseudogene	Chr4:135224575-135226438 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012771	pseudogene	Chr4:148135187-148137050 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013214	pseudogene	Chr4:133524302-133526165 (+)
PWK/PhJ	MGP_PWKPhJ_G0012282	pseudogene	Chr4:126571424-126573337 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012097	pseudogene	Chr4:129358914-129361928 (+)
WSB/EiJ	MGP_WSBEiJ_G0012489	pseudogene	Chr4:133695098-133696961 (+)

Homology

• Gene Tree
  Gm13033
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm13033
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000083816 (Evidence)
• NCBI Gene
  100038703

Representative Sequences			Length	Strain/Species
genomic	100038703	NCBI Gene Model | MGI Sequence Detail	1644	C57BL/6J
transcript	AK142202	GenBank | ENA | DDBJ | MGI Sequence Detail	824	C57BL/6J
polypeptide	Q3UQR6	UniProt | EBI | MGI Sequence Detail	130	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR000742 EGF-like domain

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;