Gm11871 Pseudogene Detail

Summary

• Symbol
  Gm11871
• Name
  predicted gene 11871

• Feature Type
  pseudogene
• IDs
  MGI:3649332
  NCBI Gene: 100418457
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:21009907-21010916 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 8.73 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649332	pseudogene	Chr4:21009880-21010940 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012546	pseudogene	Chr4:18054390-18055450 (-)
A/J	MGP_AJ_G0012539	pseudogene	Chr4:17519058-17520118 (-)
AKR/J	MGP_AKRJ_G0012505	pseudogene	Chr4:17935925-17936985 (-)
BALB/cJ	MGP_BALBcJ_G0012525	pseudogene	Chr4:17531795-17532855 (-)
C3H/HeJ	MGP_C3HHeJ_G0012386	pseudogene	Chr4:18045968-18047028 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012839	pseudogene	Chr4:18837628-18838688 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011175	pseudogene	Chr4:16261541-16262599 (-)
CAST/EiJ	MGP_CASTEiJ_G0012145	pseudogene	Chr4:17877180-17878224 (-)
CBA/J	MGP_CBAJ_G0012364	pseudogene	Chr4:19335536-19336596 (-)
DBA/2J	MGP_DBA2J_G0012418	pseudogene	Chr4:17361775-17362835 (-)
FVB/NJ	MGP_FVBNJ_G0012422	pseudogene	Chr4:17080642-17081702 (-)
LP/J	MGP_LPJ_G0012493	pseudogene	Chr4:18119731-18120791 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012428	pseudogene	Chr4:20494268-20495328 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012840	pseudogene	Chr4:17832732-17833792 (-)
PWK/PhJ	MGP_PWKPhJ_G0011976	pseudogene	Chr4:17252420-17253480 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011795	pseudogene	Chr4:17726722-17727766 (-)
WSB/EiJ	MGP_WSBEiJ_G0012170	pseudogene	Chr4:17894304-17895364 (-)

Homology

• Gene Tree
  Gm11871
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083315 (Evidence)
• NCBI Gene
  100418457

Representative Sequences			Length	Strain/Species
genomic	100418457	NCBI Gene Model | MGI Sequence Detail	1010	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;