Gm12968 Gene Detail

Summary

• Symbol
  Gm12968
• Name
  predicted gene 12968

• Feature Type
  lncRNA gene
• IDs
  MGI:3649345
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:128739990-128767491 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 62.34 cM

Strain
Comparison

• SNPs within 2kb
  420 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649345	lncRNA gene	Chr4:128739990-128767491 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006513	lincRNA gene	Chr4:130677990-130715296 (+)
A/J	MGP_AJ_G0006505	lincRNA gene	Chr4:125515240-125544113 (+)
AKR/J	MGP_AKRJ_G0006479	lincRNA gene	Chr4:128987987-129017583 (+)
BALB/cJ	MGP_BALBcJ_G0006479	lincRNA gene	Chr4:126094643-126122923 (+)
C3H/HeJ	MGP_C3HHeJ_G0006429	lincRNA gene	Chr4:129041703-129070873 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006645	lincRNA gene	Chr4:135636073-135672124 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005924	lincRNA gene	Chr4:118651248-118678520 (+)
CAST/EiJ	MGP_CASTEiJ_G0006361	lincRNA gene	Chr4:127208230-127238328 (+)
CBA/J	MGP_CBAJ_G0006412	lincRNA gene	Chr4:138937087-138970096 (+)
DBA/2J	MGP_DBA2J_G0006434	lincRNA gene	Chr4:125944722-125973104 (+)
FVB/NJ	MGP_FVBNJ_G0006456	lincRNA gene	Chr4:124696047-124725012 (+)
LP/J	MGP_LPJ_G0006514	lincRNA gene	Chr4:130996281-131024937 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006443	lincRNA gene	Chr4:143859522-143890955 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006649	lincRNA gene	Chr4:129358294-129386886 (+)
PWK/PhJ	MGP_PWKPhJ_G0006298	lincRNA gene	Chr4:122509777-122539006 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006207	lincRNA gene	Chr4:125211302-125238848 (+)
WSB/EiJ	MGP_WSBEiJ_G0006407	lincRNA gene	Chr4:129464227-129497403 (+)

Homology

• Gene Tree
  Gm12968
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12968
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085701 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085701	Ensembl Gene Model | MGI Sequence Detail	27502	C57BL/6J
transcript	ENSMUST00000138291	Ensembl | MGI Sequence Detail	1454	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12968:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39081	Chr4:128739956-128739959 (+)	-32 bp