Gm13886 Pseudogene Detail

Summary

• Symbol
  Gm13886
• Name
  predicted gene 13886

• Feature Type
  pseudogene
• IDs
  MGI:3649359
  NCBI Gene: 668744
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:104650428-104651317 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 54.97 cM

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649359	pseudogene	Chr2:104650428-104651706 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011803	pseudogene	Chr2:106947760-106948942 (+)
A/J	MGP_AJ_G0011794	pseudogene	Chr2:102483083-102485772 (+)
AKR/J	MGP_AKRJ_G0011762	pseudogene	Chr2:105276730-105277914 (+)
BALB/cJ	MGP_BALBcJ_G0011770	pseudogene	Chr2:102763396-102764580 (+)
C3H/HeJ	MGP_C3HHeJ_G0011658	pseudogene	Chr2:105596241-105597423 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012075	pseudogene	Chr2:110470122-110471304 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010567	pseudogene	Chr2:98294380-98295601 (+)
CAST/EiJ	MGP_CASTEiJ_G0011446	pseudogene	Chr2:106108480-106109663 (+)
CBA/J	MGP_CBAJ_G0011635	pseudogene	Chr2:114247588-114248772 (+)
DBA/2J	MGP_DBA2J_G0011686	pseudogene	Chr2:102032192-102033376 (+)
FVB/NJ	MGP_FVBNJ_G0011688	pseudogene	Chr2:101010432-101011615 (+)
LP/J	MGP_LPJ_G0011755	pseudogene	Chr2:107060656-107062825 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011693	pseudogene	Chr2:118114119-118115301 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012068	pseudogene	Chr2:105476908-105478090 (+)
PWK/PhJ	MGP_PWKPhJ_G0011296	pseudogene	Chr2:101567221-101568475 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011118	pseudogene	Chr2:104705905-104707056 (+)
WSB/EiJ	MGP_WSBEiJ_G0011470	pseudogene	Chr2:106207970-106209152 (+)

Homology

• Gene Tree
  Gm13886
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13886
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083856 (Evidence)
• NCBI Gene
  668744

Representative Sequences			Length	Strain/Species
genomic	668744	NCBI Gene Model | MGI Sequence Detail	890	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm13886:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19223	Chr2:104651144-104651168 (+)	728 bp