Gm13887 Pseudogene Detail

Summary

• Symbol
  Gm13887
• Name
  predicted gene 13887

• Feature Type
  pseudogene
• IDs
  MGI:3649361
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:104705547-104705890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.00 cM

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649361	pseudogene	Chr2:104705547-104705890 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011804	pseudogene	Chr2:107013799-107014125 (+)
A/J	MGP_AJ_G0011795	pseudogene	Chr2:102543338-102543681 (+)
AKR/J	MGP_AKRJ_G0011763	pseudogene	Chr2:105337971-105338314 (+)
BALB/cJ	MGP_BALBcJ_G0011771	pseudogene	Chr2:102819320-102819663 (+)
C3H/HeJ	MGP_C3HHeJ_G0011659	pseudogene	Chr2:105656239-105656582 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012076	pseudogene	Chr2:110528014-110528357 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010568	pseudogene	Chr2:98348820-98349161 (+)
CAST/EiJ	MGP_CASTEiJ_G0011447	pseudogene	Chr2:106168866-106169209 (+)
CBA/J	MGP_CBAJ_G0011636	pseudogene	Chr2:114318880-114319223 (+)
DBA/2J	MGP_DBA2J_G0011687	pseudogene	Chr2:102087104-102087447 (+)
FVB/NJ	MGP_FVBNJ_G0011689	pseudogene	Chr2:101064860-101065203 (+)
LP/J	MGP_LPJ_G0011756	pseudogene	Chr2:107123304-107123647 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011694	pseudogene	Chr2:118181570-118181896 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012069	pseudogene	Chr2:105535566-105535909 (+)
PWK/PhJ	MGP_PWKPhJ_G0011297	pseudogene	Chr2:101624308-101624651 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011119	pseudogene	Chr2:104762873-104763216 (+)
WSB/EiJ	MGP_WSBEiJ_G0011472	pseudogene	Chr2:106264216-106264559 (+)

Homology

• Gene Tree
  Gm13887
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13887
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082934 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082934	Ensembl Gene Model | MGI Sequence Detail	344	C57BL/6J
transcript	ENSMUST00000119009	Ensembl | MGI Sequence Detail	344	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17