Atp5l2-ps Pseudogene Detail

Summary

• Symbol
  Atp5l2-ps
• Name
  ATP synthase, H+ transporting, mitochondrial FO complex, subunit G2, pseudogene
• Synonyms
  Atp5l2, OTTMUSG00000002778

• Feature Type
  pseudogene
• IDs
  MGI:3649364
  NCBI Gene: 100040708
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:97658886-97659197 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.10 cM

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649364	pseudogene	Chr11:97658843-97659294 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010830	pseudogene	Chr11:96094291-96094602 (+)
AKR/J	MGP_AKRJ_G0010789	pseudogene	Chr11:99075272-99075566 (+)
BALB/cJ	MGP_BALBcJ_G0010805	pseudogene	Chr11:96591335-96591630 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0009882	pseudogene	Chr1:53932614-53932888 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0010744	pseudogene	Chr11:95141809-95142108 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010718	pseudogene	Chr11:107427304-107427605 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011055	pseudogene	Chr11:99388917-99389220 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Atp5l2-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000084168 (Evidence)
• NCBI Gene
  100040708

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084168	Ensembl Gene Model | MGI Sequence Detail	312	C57BL/6J
transcript	ENSMUST00000120130	Ensembl | MGI Sequence Detail	312	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Atp5l2-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104657	Chr11:97657454-97657513 (+)	-1,402 bp
Tssr104658	Chr11:97657652-97657686 (+)	-1,217 bp