Selenok-ps1 Pseudogene Detail

Summary

• Symbol
  Selenok-ps1
• Name
  selenoprotein K, pseudogene 1
• Synonyms
  Gm12060

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3649370
  NCBI Gene: 100134990
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:23508058-23508842 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.33 cM

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649370	pseudogene	Chr11:23508058-23508842 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015161	unclassified non-coding RNA gene	Chr11:21317893-21318682 (-)
A/J	MGP_AJ_G0015135	unclassified non-coding RNA gene	Chr11:20484314-20485103 (-)
AKR/J	MGP_AKRJ_G0015098	unclassified non-coding RNA gene	Chr11:21219549-21220338 (-)
BALB/cJ	MGP_BALBcJ_G0015098	unclassified non-coding RNA gene	Chr11:20625874-20626658 (-)
C3H/HeJ	MGP_C3HHeJ_G0014921	unclassified non-coding RNA gene	Chr11:21102550-21103329 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015554	unclassified non-coding RNA gene	Chr11:22177775-22178559 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013300	unclassified non-coding RNA gene	Chr11:19389759-19390524 (-)
CAST/EiJ	MGP_CASTEiJ_G0014475	unclassified non-coding RNA gene	Chr11:21130207-21130978 (-)
CBA/J	MGP_CBAJ_G0014900	unclassified non-coding RNA gene	Chr11:23165029-23165818 (-)
DBA/2J	MGP_DBA2J_G0014993	unclassified non-coding RNA gene	Chr11:20409573-20410352 (-)
FVB/NJ	MGP_FVBNJ_G0015005	unclassified non-coding RNA gene	Chr11:20193876-20194665 (-)
LP/J	MGP_LPJ_G0015075	unclassified non-coding RNA gene	Chr11:21412997-21413781 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015031	unclassified non-coding RNA gene	Chr11:23689951-23690725 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015593	unclassified non-coding RNA gene	Chr11:21330736-21331510 (-)
PWK/PhJ	MGP_PWKPhJ_G0014267	unclassified non-coding RNA gene	Chr11:20457994-20458907 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014054	unclassified non-coding RNA gene	Chr11:21079464-21080246 (-)
WSB/EiJ	MGP_WSBEiJ_G0014578	unclassified non-coding RNA gene	Chr11:20966118-20966892 (-)

Homology

• Gene Tree
  Selenok-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Selenok-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085415 (Evidence)
• NCBI Gene
  100134990

Representative Sequences			Length	Strain/Species
genomic	100134990	NCBI Gene Model | MGI Sequence Detail	785	C57BL/6J
transcript	NR_004857	RefSeq | MGI Sequence Detail	799	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5909026

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6