Gm11725 Gene Detail

Summary

• Symbol
  Gm11725
• Name
  predicted gene 11725

• Feature Type
  lncRNA gene
• IDs
  MGI:3649385
  NCBI Gene: 100503754
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:117762076-117778242 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 82.96 cM

Strain
Comparison

• SNPs within 2kb
  507 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649385	lncRNA gene	Chr11:117761443-117803239 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003109	antisense lncRNA gene	Chr11:122158162-122179264 (+)
A/J	MGP_AJ_G0003086	antisense lncRNA gene	Chr11:116746322-116763803 (+)
AKR/J	MGP_AKRJ_G0003067	antisense lncRNA gene	Chr11:120297451-120314017 (+)
BALB/cJ	MGP_BALBcJ_G0003073	antisense lncRNA gene	Chr11:117114978-117131462 (+)
C3H/HeJ	MGP_C3HHeJ_G0003029	antisense lncRNA gene	Chr11:120587210-120605324 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003216	antisense lncRNA gene	Chr11:125887252-125904826 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002750	antisense lncRNA gene	Chr11:113758957-113776210 (+)
CAST/EiJ	MGP_CASTEiJ_G0002998	antisense lncRNA gene	Chr11:122005917-122023254 (+)
CBA/J	MGP_CBAJ_G0003026	antisense lncRNA gene	Chr11:130837144-130853548 (+)
DBA/2J	MGP_DBA2J_G0003031	antisense lncRNA gene	Chr11:116144948-116161968 (+)
FVB/NJ	MGP_FVBNJ_G0003051	antisense lncRNA gene	Chr11:115764601-115782316 (+)
LP/J	MGP_LPJ_G0003106	antisense lncRNA gene	Chr11:122481899-122502861 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003040	antisense lncRNA gene	Chr11:129800844-129820363 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003220	antisense lncRNA gene	Chr11:120948734-120965097 (+)
PWK/PhJ	MGP_PWKPhJ_G0002956	antisense lncRNA gene	Chr11:117502936-117519144 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002900	antisense lncRNA gene	Chr11:120677335-120693688 (+)
WSB/EiJ	MGP_WSBEiJ_G0003029	antisense lncRNA gene	Chr11:120913288-120932466 (+)

Homology

• Gene Tree
  Gm11725
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  11
• Gene trapped
  11
• Find Mice (IMSR)
  12 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000085434 (Evidence)
• NCBI Gene
  100503754

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085434	Ensembl Gene Model | MGI Sequence Detail	16167	C57BL/6J
transcript	ENSMUST00000125607	Ensembl | MGI Sequence Detail	1850	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm11725:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106097	Chr11:117769382-117769389 (+)	7,310 bp