Gm13929 Pseudogene Detail

Summary

• Symbol
  Gm13929
• Name
  predicted gene 13929

• Feature Type
  pseudogene
• IDs
  MGI:3649396
  NCBI Gene: 433463
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:111830525-111831649 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.75 cM

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649396	pseudogene	Chr2:111830450-111831846 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039695	pseudogene	Chr2:114431894-114433018 (+)
A/J	MGP_AJ_G0039693	pseudogene	Chr2:109741432-109742556 (+)
AKR/J	MGP_AKRJ_G0039619	pseudogene	Chr2:112768397-112769521 (+)
BALB/cJ	MGP_BALBcJ_G0039663	pseudogene	Chr2:110000941-110002065 (+)
C3H/HeJ	MGP_C3HHeJ_G0039325	pseudogene	Chr2:113211378-113212502 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040224	pseudogene	Chr2:118222104-118223228 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038446	pseudogene	Chr2:113479995-113481119 (+)
CBA/J	MGP_CBAJ_G0039296	pseudogene	Chr2:122317405-122318529 (+)
DBA/2J	MGP_DBA2J_G0039490	pseudogene	Chr2:109205093-109206217 (+)
FVB/NJ	MGP_FVBNJ_G0039448	pseudogene	Chr2:108086426-108087550 (+)
LP/J	MGP_LPJ_G0039529	pseudogene	Chr2:114635865-114636989 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039450	pseudogene	Chr2:126730908-126732032 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040325	pseudogene	Chr2:112900773-112902850 (+)
PWK/PhJ	MGP_PWKPhJ_G0038122	pseudogene	Chr2:108713399-108714836 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038679	pseudogene	Chr2:113691875-113693964 (+)

Homology

• Gene Tree
  Gm13929
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13929
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000081037 (Evidence)
• NCBI Gene
  433463

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081037	Ensembl Gene Model | MGI Sequence Detail	1125	C57BL/6J
transcript	ENSMUST00000117553	Ensembl | MGI Sequence Detail	1125	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm13929:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19339	Chr2:111830446-111830450 (+)	-77 bp
Tssr19340	Chr2:111830673-111830688 (+)	156 bp