Prame62 Gene Detail

Summary

• Symbol
  Prame62
• Name
  PRAME like 62
• Synonyms
  Gm12789

• Feature Type
  protein coding gene
• IDs
  MGI:3649399
  NCBI Gene: 381536
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:101844037-101847428 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 46.99 cM

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649399	protein coding gene	Chr4:101843823-101847428 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0028499	protein coding gene	Chr4:102325174-102328623 (+)
A/J	MGP_AJ_G0028462	protein coding gene	Chr4:98762514-98765941 (+)
AKR/J	MGP_AKRJ_G0028409	protein coding gene	Chr4:101139799-101144055 (+)
BALB/cJ	MGP_BALBcJ_G0028481	protein coding gene	Chr4:98949687-98953114 (+)
C3H/HeJ	MGP_C3HHeJ_G0028195	protein coding gene	Chr4:101930445-101934761 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0028921	protein coding gene	Chr4:106171052-106185095 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026212	protein coding gene	Chr4:94162449-94166095 (+)
CAST/EiJ	MGP_CASTEiJ_G0027631	protein coding gene	Chr4:99682272-99689911 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0028312	protein coding gene	Chr4:98441556-98443822 (+)
FVB/NJ	MGP_FVBNJ_G0028279	protein coding gene	Chr4:97289563-97293042 (+)
LP/J	MGP_LPJ_G0028413	protein coding gene	Chr4:102640556-102644132 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028306	protein coding gene	Chr4:115051916-115059316 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028956	protein coding gene	Chr4:101375318-101378762 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0027181	protein coding gene	Chr4:98801381-98803255 (+)
WSB/EiJ	MGP_WSBEiJ_G0027711	protein coding gene	Chr4:101549671-101554827 (+)

Homology

• MGI Vertebrate Homology
  Prame62 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Prame62
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Prame62
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  13 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS38823.1

• Ensembl
  ENSMUSG00000078625 (Evidence)
• NCBI Gene
  381536

Representative Sequences			Length	Strain/Species
genomic	381536	NCBI Gene Model | MGI Sequence Detail	3392	C57BL/6J
transcript	NM_001085520	RefSeq | MGI Sequence Detail	847	Not Specified
polypeptide	NP_001078989	RefSeq | MGI Sequence Detail	164	Not Specified

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR050694 PRAME domain-containing protein

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7579376

References

• Summaries
  All 19

  Phenotypes 8
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42