Gm12793 Pseudogene Detail

Summary

• Symbol
  Gm12793
• Name
  predicted gene 12793

• Feature Type
  pseudogene
• IDs
  MGI:3649401
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:101198554-101198845 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 46.65 cM

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649401	pseudogene	Chr4:101198554-101198845 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012790	pseudogene	Chr4:101641420-101641711 (+)
A/J	MGP_AJ_G0012775	pseudogene	Chr4:98089809-98090100 (+)
AKR/J	MGP_AKRJ_G0012746	pseudogene	Chr4:100465178-100465469 (+)
BALB/cJ	MGP_BALBcJ_G0012756	pseudogene	Chr4:98291491-98291782 (+)
C3H/HeJ	MGP_C3HHeJ_G0012613	pseudogene	Chr4:101259120-101259411 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013088	pseudogene	Chr4:105476924-105477215 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011368	pseudogene	Chr4:93365780-93366071 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012589	pseudogene	Chr4:108793910-108794201 (+)
DBA/2J	MGP_DBA2J_G0012652	pseudogene	Chr4:97789180-97789471 (+)
FVB/NJ	MGP_FVBNJ_G0012656	pseudogene	Chr4:96620727-96621018 (+)
LP/J	MGP_LPJ_G0012727	pseudogene	Chr4:101937678-101937969 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012665	pseudogene	Chr4:114336251-114336542 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013095	pseudogene	Chr4:100716492-100716783 (+)
PWK/PhJ	MGP_PWKPhJ_G0012191	pseudogene	Chr4:95953872-95954163 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012000	pseudogene	Chr4:98163961-98164252 (+)
WSB/EiJ	MGP_WSBEiJ_G0012394	pseudogene	Chr4:100880129-100880420 (+)

Homology

• Gene Tree
  Gm12793
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12793
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000081621 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081621	Ensembl Gene Model | MGI Sequence Detail	292	C57BL/6J
transcript	ENSMUST00000119268	Ensembl | MGI Sequence Detail	292	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;