Gm12837 Pseudogene Detail

Summary

• Symbol
  Gm12837
• Name
  predicted gene 12837

• Feature Type
  pseudogene
• IDs
  MGI:3649425
  NCBI Gene: 115489921
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:115273279-115273651 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 52.99 cM

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649425	pseudogene	Chr4:115273193-115277285 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012828	pseudogene	Chr4:116213982-116214354 (-)
A/J	MGP_AJ_G0012813	pseudogene	Chr4:111779035-111779407 (-)
AKR/J	MGP_AKRJ_G0012783	pseudogene	Chr4:114099792-114103913 (-)
BALB/cJ	MGP_BALBcJ_G0012794	pseudogene	Chr4:112396302-112396674 (-)
C3H/HeJ	MGP_C3HHeJ_G0012650	pseudogene	Chr4:115685441-115685813 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013130	pseudogene	Chr4:120707957-120708329 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011392	pseudogene	Chr4:105904205-105904577 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012627	pseudogene	Chr4:123894309-123894681 (-)
DBA/2J	MGP_DBA2J_G0012689	pseudogene	Chr4:112437893-112438265 (-)
FVB/NJ	MGP_FVBNJ_G0012692	pseudogene	Chr4:110894960-110895332 (-)
LP/J	MGP_LPJ_G0012763	pseudogene	Chr4:116368605-116368977 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012702	pseudogene	Chr4:129005710-129006082 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012033	pseudogene	Chr4:111646530-111646903 (-)
WSB/EiJ	MGP_WSBEiJ_G0012430	pseudogene	Chr4:115162894-115163245 (-)

Homology

• Gene Tree
  Gm12837
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12837
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000084415 (Evidence)
• NCBI Gene
  115489921

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084415	Ensembl Gene Model | MGI Sequence Detail	373	C57BL/6J
transcript	ENSMUST00000120131	Ensembl | MGI Sequence Detail	373	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;