Gm12472 Gene Detail

Summary

• Symbol
  Gm12472
• Name
  predicted gene 12472

• Feature Type
  lncRNA gene
• IDs
  MGI:3649439
  NCBI Gene: 100038450
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:43588072-43608755 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 23.05 cM

Strain
Comparison

• SNPs within 2kb
  654 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649439	lncRNA gene	Chr4:43588072-43608755 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003890	antisense lncRNA gene	Chr4:41714078-41735054 (+)
A/J	MGP_AJ_G0003870	antisense lncRNA gene	Chr4:40230860-40251623 (+)
AKR/J	MGP_AKRJ_G0003847	antisense lncRNA gene	Chr4:41141969-41164015 (+)
BALB/cJ	MGP_BALBcJ_G0003857	antisense lncRNA gene	Chr4:40320215-40340851 (+)
C3H/HeJ	MGP_C3HHeJ_G0003803	antisense lncRNA gene	Chr4:41773034-41795407 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004004	antisense lncRNA gene	Chr4:43273244-43296801 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003498	antisense lncRNA gene	Chr4:37678280-37699728 (+)
CAST/EiJ	MGP_CASTEiJ_G0003768	antisense lncRNA gene	Chr4:41278467-41305304 (+)
CBA/J	MGP_CBAJ_G0003796	antisense lncRNA gene	Chr4:44592230-44615346 (+)
DBA/2J	MGP_DBA2J_G0003813	antisense lncRNA gene	Chr4:40140154-40161618 (+)
FVB/NJ	MGP_FVBNJ_G0003831	antisense lncRNA gene	Chr4:39362313-39384266 (+)
LP/J	MGP_LPJ_G0003892	antisense lncRNA gene	Chr4:41766603-41787229 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003819	antisense lncRNA gene	Chr4:47847620-47873829 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004000	antisense lncRNA gene	Chr4:41345800-41370373 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0003669	antisense lncRNA gene	Chr4:40906099-40929649 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12472
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12472
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085351 (Evidence)
• NCBI Gene
  100038450

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085351	Ensembl Gene Model | MGI Sequence Detail	20684	C57BL/6J
transcript	ENSMUST00000153232	Ensembl | MGI Sequence Detail	1140	Not Applicable
polypeptide	Q3USN1	UniProt | EBI | MGI Sequence Detail	57	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;