Gm13542 Pseudogene Detail

Summary

• Symbol
  Gm13542
• Name
  predicted gene 13542

• Feature Type
  pseudogene
• IDs
  MGI:3649446
  NCBI Gene: 665199
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:25884559-25885195 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 18.29 cM

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649446	pseudogene	Chr2:25884559-25885195 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011569	pseudogene	Chr2:23933168-23933804 (-)
A/J	MGP_AJ_G0011566	pseudogene	Chr2:23007904-23008539 (-)
AKR/J	MGP_AKRJ_G0011531	pseudogene	Chr2:23759890-23760525 (-)
BALB/cJ	MGP_BALBcJ_G0011546	pseudogene	Chr2:23117119-23117755 (-)
C3H/HeJ	MGP_C3HHeJ_G0011431	pseudogene	Chr2:23697394-23698030 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011838	pseudogene	Chr2:24690519-24691155 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010373	pseudogene	Chr2:21888134-21888757 (-)
CAST/EiJ	MGP_CASTEiJ_G0011232	pseudogene	Chr2:23581776-23582408 (-)
CBA/J	MGP_CBAJ_G0011404	pseudogene	Chr2:25534662-25535299 (-)
DBA/2J	MGP_DBA2J_G0011462	pseudogene	Chr2:22833393-22834028 (-)
FVB/NJ	MGP_FVBNJ_G0011462	pseudogene	Chr2:22584208-22584844 (-)
LP/J	MGP_LPJ_G0011526	pseudogene	Chr2:23868447-23869083 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011461	pseudogene	Chr2:25710075-25710711 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011826	pseudogene	Chr2:23721169-23721801 (-)
PWK/PhJ	MGP_PWKPhJ_G0011091	pseudogene	Chr2:22633264-22633896 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010911	pseudogene	Chr2:23842512-23843152 (-)
WSB/EiJ	MGP_WSBEiJ_G0011255	pseudogene	Chr2:23818078-23818710 (-)

Homology

• Gene Tree
  Gm13542
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082357 (Evidence)
• NCBI Gene
  665199

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082357	Ensembl Gene Model | MGI Sequence Detail	637	C57BL/6J
transcript	ENSMUST00000118484	Ensembl | MGI Sequence Detail	637	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;