Gm11786 Pseudogene Detail

Summary

• Symbol
  Gm11786
• Name
  predicted gene 11786

• Feature Type
  pseudogene
• IDs
  MGI:3649460
  NCBI Gene: 100422783
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:3327175-3327329 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 1.85 cM

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649460	pseudogene	Chr4:3327170-3327329 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012949	pseudogene	Chr5:231950-232120 (+)
A/J	MGP_AJ_G0012938	pseudogene	Chr5:117452-117622 (+)
AKR/J	MGP_AKRJ_G0012905	pseudogene	Chr5:99828-99982 (+)
BALB/cJ	MGP_BALBcJ_G0012917	pseudogene	Chr5:358361-358531 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013275	pseudogene	Chr5:488290-488460 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011486	pseudogene	Chr5:139923-140093 (+)
CAST/EiJ	MGP_CASTEiJ_G0012505	pseudogene	Chr5:272960-273130 (+)
CBA/J	MGP_CBAJ_G0012739	pseudogene	Chr5:361938-362108 (+)
DBA/2J	MGP_DBA2J_G0012813	pseudogene	Chr5:262489-262659 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012882	pseudogene	Chr5:263324-263494 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010536	pseudogene	Chr15:32839-32993 (+)
WSB/EiJ	MGP_WSBEiJ_G0012540	pseudogene	Chr5:271076-271246 (+)

Homology

• Gene Tree
  Gm11786
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000083632 (Evidence)
• NCBI Gene
  100422783

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083632	Ensembl Gene Model | MGI Sequence Detail	155	C57BL/6J
transcript	ENSMUST00000120799	Ensembl | MGI Sequence Detail	155	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;