Gm12953 Gene Detail

Summary

• Symbol
  Gm12953
• Name
  predicted gene 12953

• Feature Type
  lncRNA gene
• IDs
  MGI:3649497
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:116408937-116409824 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.22 cM

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649497	lncRNA gene	Chr4:116408937-116409824 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003938	antisense lncRNA gene	Chr4:117450427-117451334 (+)
A/J	MGP_AJ_G0003919	antisense lncRNA gene	Chr4:112949799-112950739 (+)
AKR/J	MGP_AKRJ_G0003896	antisense lncRNA gene	Chr4:115378938-115379784 (+)
BALB/cJ	MGP_BALBcJ_G0003905	antisense lncRNA gene	Chr4:113574271-113575158 (+)
C3H/HeJ	MGP_C3HHeJ_G0003852	antisense lncRNA gene	Chr4:116949493-116951132 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004053	antisense lncRNA gene	Chr4:121993811-121996055 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0003845	antisense lncRNA gene	Chr4:125299964-125300841 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0003880	antisense lncRNA gene	Chr4:112082343-112083159 (+)
LP/J	MGP_LPJ_G0003941	antisense lncRNA gene	Chr4:117658481-117659361 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003868	antisense lncRNA gene	Chr4:130288560-130289387 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004048	antisense lncRNA gene	Chr4:116538969-116539858 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0003851	antisense lncRNA gene	Chr4:116414283-116415194 (+)

Homology

• Gene Tree
  Gm12953
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12953
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000087299 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087299	Ensembl Gene Model | MGI Sequence Detail	888	C57BL/6J
transcript	ENSMUST00000138426	Ensembl | MGI Sequence Detail	751	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12