Gm11876 Pseudogene Detail

Summary

• Symbol
  Gm11876
• Name
  predicted gene 11876

• Feature Type
  pseudogene
• IDs
  MGI:3649518
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:21671040-21671308 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 8.78 cM

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649518	pseudogene	Chr4:21671040-21671308 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012548	pseudogene	Chr4:18687207-18687475 (+)
A/J	MGP_AJ_G0012541	pseudogene	Chr4:18129915-18130183 (+)
AKR/J	MGP_AKRJ_G0012507	pseudogene	Chr4:18538228-18538496 (+)
BALB/cJ	MGP_BALBcJ_G0012527	pseudogene	Chr4:18185313-18185581 (+)
C3H/HeJ	MGP_C3HHeJ_G0012388	pseudogene	Chr4:18718733-18719001 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012841	pseudogene	Chr4:19449493-19449761 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011177	pseudogene	Chr4:16787909-16788195 (+)
CAST/EiJ	MGP_CASTEiJ_G0012147	pseudogene	Chr4:18473553-18473817 (+)
CBA/J	MGP_CBAJ_G0012366	pseudogene	Chr4:20005429-20005697 (+)
DBA/2J	MGP_DBA2J_G0012420	pseudogene	Chr4:17992507-17992775 (+)
FVB/NJ	MGP_FVBNJ_G0012424	pseudogene	Chr4:17715527-17715795 (+)
LP/J	MGP_LPJ_G0012495	pseudogene	Chr4:18761883-18762151 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012430	pseudogene	Chr4:21230888-21231156 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012842	pseudogene	Chr4:18486273-18486541 (+)
PWK/PhJ	MGP_PWKPhJ_G0011978	pseudogene	Chr4:17823168-17823436 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011797	pseudogene	Chr4:18309683-18309951 (+)
WSB/EiJ	MGP_WSBEiJ_G0012172	pseudogene	Chr4:18497886-18498154 (+)

Homology

• Gene Tree
  Gm11876
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082672 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082672	Ensembl Gene Model | MGI Sequence Detail	269	C57BL/6J
transcript	ENSMUST00000120002	Ensembl | MGI Sequence Detail	269	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;