Gm13649 Pseudogene Detail

Summary

• Symbol
  Gm13649
• Name
  predicted gene 13649

• Feature Type
  pseudogene
• IDs
  MGI:3649521
  NCBI Gene: 667906
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:77165703-77166308 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 45.94 cM

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649521	pseudogene	Chr2:77165649-77166349 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011704	pseudogene	Chr2:74756388-74756993 (+)
AKR/J	MGP_AKRJ_G0011671	pseudogene	Chr2:76750567-76751172 (+)
BALB/cJ	MGP_BALBcJ_G0011685	pseudogene	Chr2:74931701-74932306 (+)
C3H/HeJ	MGP_C3HHeJ_G0011571	pseudogene	Chr2:76963896-76964501 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011979	pseudogene	Chr2:80068411-80069016 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010490	pseudogene	Chr2:72143477-72144094 (+)
CAST/EiJ	MGP_CASTEiJ_G0011359	pseudogene	Chr2:77320610-77321215 (+)
CBA/J	MGP_CBAJ_G0011546	pseudogene	Chr2:83008280-83008885 (+)
DBA/2J	MGP_DBA2J_G0011596	pseudogene	Chr2:74334021-74334626 (+)
FVB/NJ	MGP_FVBNJ_G0011602	pseudogene	Chr2:73725152-73725757 (+)
LP/J	MGP_LPJ_G0011666	pseudogene	Chr2:77651201-77651806 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011603	pseudogene	Chr2:84816358-84816963 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011975	pseudogene	Chr2:76875659-76876264 (+)
PWK/PhJ	MGP_PWKPhJ_G0011212	pseudogene	Chr2:74302606-74303211 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011036	pseudogene	Chr2:77120199-77120804 (+)
WSB/EiJ	MGP_WSBEiJ_G0011386	pseudogene	Chr2:77346961-77347566 (+)

Homology

• Gene Tree
  Gm13649
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13649
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082006 (Evidence)
• NCBI Gene
  667906

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082006	Ensembl Gene Model | MGI Sequence Detail	606	C57BL/6J
transcript	ENSMUST00000122325	Ensembl | MGI Sequence Detail	606	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13649:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr544	Chr2:77165413-77165414 (+)	-289 bp