Gm12442 Pseudogene Detail

Summary

• Symbol
  Gm12442
• Name
  predicted gene 12442

• Feature Type
  pseudogene
• IDs
  MGI:3649531
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:48972978-48973315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.27 cM

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649531	pseudogene	Chr4:48972978-48973315 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012643	pseudogene	Chr4:47414796-47415133 (+)
A/J	MGP_AJ_G0012632	pseudogene	Chr4:45651515-45651852 (+)
AKR/J	MGP_AKRJ_G0012601	pseudogene	Chr4:46837485-46837822 (+)
BALB/cJ	MGP_BALBcJ_G0012616	pseudogene	Chr4:45782118-45782455 (+)
C3H/HeJ	MGP_C3HHeJ_G0012478	pseudogene	Chr4:47406331-47406668 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012937	pseudogene	Chr4:49129749-49130086 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011252	pseudogene	Chr4:42980072-42980410 (+)
CAST/EiJ	MGP_CASTEiJ_G0012232	pseudogene	Chr4:46994540-46994877 (+)
CBA/J	MGP_CBAJ_G0012458	pseudogene	Chr4:50718983-50719320 (+)
DBA/2J	MGP_DBA2J_G0012514	pseudogene	Chr4:45536247-45536584 (+)
FVB/NJ	MGP_FVBNJ_G0012515	pseudogene	Chr4:44813495-44813832 (+)
LP/J	MGP_LPJ_G0012584	pseudogene	Chr4:47494115-47494452 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012521	pseudogene	Chr4:53713688-53714025 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012938	pseudogene	Chr4:47020150-47020487 (+)
PWK/PhJ	MGP_PWKPhJ_G0012062	pseudogene	Chr4:45678112-45678449 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011876	pseudogene	Chr4:46545077-46545415 (+)
WSB/EiJ	MGP_WSBEiJ_G0012254	pseudogene	Chr4:46957114-46957451 (+)

Homology

• Gene Tree
  Gm12442
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Transgenic
  2
• Genomic Mutations
  2 involving Gm12442
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083869 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083869	Ensembl Gene Model | MGI Sequence Detail	338	C57BL/6J
transcript	ENSMUST00000118372	Ensembl | MGI Sequence Detail	338	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:257167 Kaneko R, et al., Inhibitory neuron-specific Cre-dependent red fluorescent labeling using VGAT BAC-based transgenic mouse lines with identified transgene integration sites. J Comp Neurol. 2018 Feb 15;526(3):373-396