Gm12517 Pseudogene Detail

Summary

• Symbol
  Gm12517
• Name
  predicted gene 12517

• Feature Type
  pseudogene
• IDs
  MGI:3649535
  NCBI Gene: 108168855
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:108509707-108510131 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 47.39 cM

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649535	pseudogene	Chr3:108509596-108511704 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012347	pseudogene	Chr3:110169439-110169863 (-)
A/J	MGP_AJ_G0012342	pseudogene	Chr3:106674963-106675387 (-)
AKR/J	MGP_AKRJ_G0012308	pseudogene	Chr3:109262782-109263206 (-)
BALB/cJ	MGP_BALBcJ_G0012325	pseudogene	Chr3:106371517-106371941 (-)
C3H/HeJ	MGP_C3HHeJ_G0012189	pseudogene	Chr3:109623274-109623698 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012637	pseudogene	Chr3:114268693-114269117 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011010	pseudogene	Chr3:102805919-102806345 (-)
CAST/EiJ	MGP_CASTEiJ_G0011956	pseudogene	Chr3:109015842-109016266 (-)
CBA/J	MGP_CBAJ_G0012168	pseudogene	Chr3:118169973-118170397 (-)
DBA/2J	MGP_DBA2J_G0012224	pseudogene	Chr3:105846951-105847375 (-)
FVB/NJ	MGP_FVBNJ_G0012226	pseudogene	Chr3:103736059-103736483 (-)
LP/J	MGP_LPJ_G0012294	pseudogene	Chr3:111582190-111582614 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012230	pseudogene	Chr3:124218174-124218598 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012642	pseudogene	Chr3:108869518-108869942 (-)
PWK/PhJ	MGP_PWKPhJ_G0011799	pseudogene	Chr3:105600796-105601221 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011614	pseudogene	Chr3:107006684-107007109 (-)
WSB/EiJ	MGP_WSBEiJ_G0011988	pseudogene	Chr3:109402851-109403275 (-)

Homology

• Gene Tree
  Gm12517
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12517
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081499 (Evidence)
• NCBI Gene
  108168855

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081499	Ensembl Gene Model | MGI Sequence Detail	425	C57BL/6J
transcript	ENSMUST00000122082	Ensembl | MGI Sequence Detail	425	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;