Gm12781 Gene Detail

Summary

• Symbol
  Gm12781
• Name
  predicted gene 12781

• Feature Type
  lncRNA gene
• IDs
  MGI:3649569
  NCBI Gene: 102639020
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:34359389-34360703 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 20.46 cM

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649569	lncRNA gene	Chr7:34352609-34362450 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004442	antisense lncRNA gene	Chr7:33965258-33974418 (+)
A/J	MGP_AJ_G0004421	antisense lncRNA gene	Chr7:33088852-33096071 (+)
AKR/J	MGP_AKRJ_G0004403	antisense lncRNA gene	Chr7:33879903-33887140 (+)
BALB/cJ	MGP_BALBcJ_G0004406	antisense lncRNA gene	Chr7:33388522-33397510 (+)
C3H/HeJ	MGP_C3HHeJ_G0004356	antisense lncRNA gene	Chr7:34780304-34788401 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004556	antisense lncRNA gene	Chr7:35663280-35674168 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004012	antisense lncRNA gene	Chr7:33820639-33827798 (+)
CAST/EiJ	MGP_CASTEiJ_G0004316	antisense lncRNA gene	Chr7:25891708-25900266 (+)
CBA/J	MGP_CBAJ_G0004350	antisense lncRNA gene	Chr7:36773060-36780261 (+)
DBA/2J	MGP_DBA2J_G0004364	antisense lncRNA gene	Chr7:32938001-32945510 (+)
FVB/NJ	MGP_FVBNJ_G0004382	antisense lncRNA gene	Chr7:32863312-32870463 (+)
LP/J	MGP_LPJ_G0004445	antisense lncRNA gene	Chr7:34305394-34313959 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004373	antisense lncRNA gene	Chr7:35827810-35836465 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004554	antisense lncRNA gene	Chr7:33412286-33421617 (+)
PWK/PhJ	MGP_PWKPhJ_G0004269	antisense lncRNA gene	Chr7:26264417-26271903 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004210	antisense lncRNA gene	Chr7:22980878-22991366 (+)
WSB/EiJ	MGP_WSBEiJ_G0004355	antisense lncRNA gene	Chr7:33957502-33964698 (+)

Homology

• Gene Tree
  Gm12781
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000085923 (Evidence)
• NCBI Gene
  102639020

Representative Sequences			Length	Strain/Species
genomic	102639020	NCBI Gene Model | MGI Sequence Detail	1315	C57BL/6J
transcript	NR_175860	RefSeq | MGI Sequence Detail	1185	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12781:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65882	Chr7:34359383-34359394 (+)	0 bp
Tssr65883	Chr7:34359395-34359429 (+)	23 bp