Gm12404 Gene Detail

Summary

• Symbol
  Gm12404
• Name
  predicted gene 12404

• Feature Type
  lncRNA gene
• IDs
  MGI:3649601
  NCBI Gene: 102637977
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:41520372-41521051 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 21.71 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649601	lncRNA gene	Chr4:41520372-41525823 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015542	unclassified non-coding RNA gene	Chr4:39469053-39474182 (+)
A/J	MGP_AJ_G0015519	unclassified non-coding RNA gene	Chr4:37965110-37970234 (+)
AKR/J	MGP_AKRJ_G0015483	unclassified non-coding RNA gene	Chr4:38950308-38955434 (+)
BALB/cJ	MGP_BALBcJ_G0015481	unclassified non-coding RNA gene	Chr4:38301642-38306768 (+)
C3H/HeJ	MGP_C3HHeJ_G0015304	unclassified non-coding RNA gene	Chr4:39498049-39503175 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015935	unclassified non-coding RNA gene	Chr4:40931562-40936691 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013670	unclassified non-coding RNA gene	Chr4:35622183-35627431 (+)
CAST/EiJ	MGP_CASTEiJ_G0014858	unclassified non-coding RNA gene	Chr4:39174247-39179376 (+)
CBA/J	MGP_CBAJ_G0015285	unclassified non-coding RNA gene	Chr4:42325650-42330776 (+)
DBA/2J	MGP_DBA2J_G0015379	unclassified non-coding RNA gene	Chr4:37888752-37893878 (+)
FVB/NJ	MGP_FVBNJ_G0015386	unclassified non-coding RNA gene	Chr4:37218715-37223841 (+)
LP/J	MGP_LPJ_G0015458	unclassified non-coding RNA gene	Chr4:39548735-39553864 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015410	unclassified non-coding RNA gene	Chr4:45630004-45635130 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015976	unclassified non-coding RNA gene	Chr4:39064519-39069645 (+)
PWK/PhJ	MGP_PWKPhJ_G0014644	unclassified non-coding RNA gene	Chr4:37918702-37923822 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014432	unclassified non-coding RNA gene	Chr4:38797047-38802120 (+)
WSB/EiJ	MGP_WSBEiJ_G0014964	unclassified non-coding RNA gene	Chr4:39050831-39055927 (+)

Homology

• Gene Tree
  Gm12404
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12404
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087623 (Evidence)
• NCBI Gene
  102637977

Representative Sequences			Length	Strain/Species
genomic	102637977	NCBI Gene Model | MGI Sequence Detail	680	C57BL/6J
transcript	AK086793	GenBank | ENA | DDBJ | MGI Sequence Detail	1563	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;