Trav6-5 Gene Detail

Summary

• Symbol
  Trav6-5
• Name
  T cell receptor alpha variable 6-5

• Feature Type
  gene segment
• IDs
  MGI:3649609
  NCBI Gene: 100126464
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53728609-53729079 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.39 cM

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649609	gene segment	Chr14:53728572-53729079 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002556	gene segment	Chr14:47415684-47416193 (+)
A/J	MGP_AJ_G0002498	gene segment	Chr14:45634903-45635412 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0002472	gene segment	Chr14:47077668-47078136 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002630	gene segment	Chr14:49312649-49313154 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002440	gene segment	Chr14:44095776-44096282 (+)
CBA/J	MGP_CBAJ_G0002464	gene segment	Chr14:50441026-50441535 (+)
DBA/2J	MGP_DBA2J_G0002472	gene segment	Chr14:45381038-45381544 (+)
FVB/NJ	MGP_FVBNJ_G0002485	gene segment	Chr14:44951827-44952351 (+)
LP/J	MGP_LPJ_G0002528	gene segment	Chr14:47500014-47500520 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002468	gene segment	Chr14:50231847-50232349 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002619	gene segment	Chr14:46620286-46620793 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002359	gene segment	Chr14:43088094-43088596 (+)
WSB/EiJ	MGP_WSBEiJ_G0002469	gene segment	Chr14:46920361-46920867 (+)

Homology

• Human Ortholog
  TRAV9-1, T cell receptor alpha variable 9-1

• Vertebrate Orthologs
  11

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV9-1, T cell receptor alpha variable 9-1
  
• Synonyms
  TCRAV9S1, TRAV91
• Links
  HGNC:12153

  NCBI Gene ID: 28678

  UniProt: A0A075B6T8

  
  
• Chr Location
  14q11.2; chr14:21811502-21811977 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav6-5 stringent orthology
  1 human;1 mouse;10 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV9-1
• Gene Tree
  Trav6-5
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000096149 (Evidence)
• NCBI Gene
  100126464

Representative Sequences			Length	Strain/Species
genomic	100126464	NCBI Gene Model | MGI Sequence Detail	471	C57BL/6J
polypeptide	A0A075B6B5	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 8
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61