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Trav6-3 Gene Detail
Summary
  • Symbol
    Trav6-3
  • Name
    T cell receptor alpha variable 6-3
  • Feature Type
    gene segment
  • IDs
    MGI:3649610
    NCBI Gene: 328483
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:53666218-53667834 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.36 cM
Strain
Comparison
more
  • SNPs within 2kb
    144 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649610
 gene segment Chr14:53666168-53667834 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002526
 gene segment Chr14:46768216-46769884 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002483
 gene segment Chr14:47211637-47213302 (+)
BALB/cJ MGP_BALBcJ_G0002512
 gene segment Chr14:46375287-46376955 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002640
 gene segment Chr14:49673112-49674770 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002220
 gene segment Chr14:44583499-44583799 (+)
CAST/EiJ MGP_CASTEiJ_G0002426
 gene segment Chr14:43848930-43849202 (+)
CBA/J MGP_CBAJ_G0002458
 gene segment Chr14:50339966-50341634 (+)
DBA/2J MGP_DBA2J_G0002467
 gene segment Chr14:45318025-45319690 (+)
FVB/NJ MGP_FVBNJ_G0002481
 gene segment Chr14:44892162-45622802 (+)
LP/J MGP_LPJ_G0002522
 gene segment Chr14:47418278-47419943 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002480
 gene segment Chr14:50576100-50587261 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002661
 gene segment Chr14:47266301-47267969 (+)
PWK/PhJ MGP_PWKPhJ_G0002408
 gene segment Chr14:41993010-41993282 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002344
 gene segment Chr14:42591294-42592964 (+)
WSB/EiJ MGP_WSBEiJ_G0002461
 gene segment Chr14:46860566-46862235 (+)



Homology
more
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-2, T cell receptor alpha variable 9-2
  • Synonyms
    TCRAV22S1, TCRAV9S2, TRAV92
  • Links
    NCBI Gene ID: 28677
    UniProt: A0A087WT02

  • Chr Location
    14q11.2; chr14:21941128-21941657 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 328483 NCBI Gene Model | MGI Sequence Detail 1617 C57BL/6J ±  kb
transcript AK134090 GenBank | ENA | DDBJ | MGI Sequence Detail 1171 C57BL/6J  
polypeptide Q5R1E6 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 12
  • Earliest
    J:86383 Yoshida Y, et al., Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains. J Biol Chem. 2003 Oct 31;278(44):43877-84
  • Latest
    J:225833 Preston GC, et al., Single cell tuning of Myc expression by antigen receptor signal strength and interleukin-2 in T lymphocytes. EMBO J. 2015 Aug 4;34(15):2008-24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory