Gm12818 Pseudogene Detail

Summary

• Symbol
  Gm12818
• Name
  predicted gene 12818

• Feature Type
  pseudogene
• IDs
  MGI:3649634
  NCBI Gene: 100534383
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:112835662-112837010 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 51.53 cM

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649634	pseudogene	Chr4:112835465-112837040 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011492	pseudogene	Chr19:31119481-31148717 (+)
A/J	MGP_AJ_G0011488	pseudogene	Chr19:29569672-29600239 (+)
AKR/J	MGP_AKRJ_G0011453	pseudogene	Chr19:30603709-30633261 (+)
BALB/cJ	MGP_BALBcJ_G0011468	pseudogene	Chr19:29622224-29650178 (+)
C3H/HeJ	MGP_C3HHeJ_G0011356	pseudogene	Chr19:30596697-30623627 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013127	pseudogene	Chr4:117973917-117975368 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010301	pseudogene	Chr19:29475027-29505531 (+)
CAST/EiJ	MGP_CASTEiJ_G0011153	pseudogene	Chr19:30499285-30530839 (+)
CBA/J	MGP_CBAJ_G0011325	pseudogene	Chr19:33472136-33506107 (+)
DBA/2J	MGP_DBA2J_G0011381	pseudogene	Chr19:29493893-29521635 (+)
FVB/NJ	MGP_FVBNJ_G0011387	pseudogene	Chr19:29318316-29346055 (+)
LP/J	MGP_LPJ_G0011450	pseudogene	Chr19:31121435-31149067 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011383	pseudogene	Chr19:33330938-33358558 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0011010	pseudogene	Chr19:29189368-29216951 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010835	pseudogene	Chr19:29987912-30013736 (+)
WSB/EiJ	MGP_WSBEiJ_G0011181	pseudogene	Chr19:30690589-30719628 (+)

Homology

• Gene Tree
  Gm12818
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm12818
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082678 (Evidence)
• NCBI Gene
  100534383

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082678	Ensembl Gene Model | MGI Sequence Detail	1349	C57BL/6J
transcript	ENSMUST00000117562	Ensembl | MGI Sequence Detail	1349	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:262448 Narita T, et al., Mice lacking all of the Skint family genes. Int Immunol. 2018 Apr 26;
• Latest
  J:323863 McKenzie DR, et al., Normality sensing licenses local T cells for innate-like tissue surveillance. Nat Immunol. 2022 Mar;23(3):411-422