Gm13565 Gene Detail

Summary

• Symbol
  Gm13565
• Name
  predicted gene 13565

• Feature Type
  lncRNA gene
• IDs
  MGI:3649651
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:62267224-62271486 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 35.85 cM

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649651	lncRNA gene	Chr2:62267224-62271486 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005922	lincRNA gene	Chr2:62120839-62125098 (-)
A/J	MGP_AJ_G0005915	lincRNA gene	Chr2:59743237-59747500 (-)
AKR/J	MGP_AKRJ_G0005890	lincRNA gene	Chr2:61342934-61347196 (-)
BALB/cJ	MGP_BALBcJ_G0005894	lincRNA gene	Chr2:59851596-59855858 (-)
C3H/HeJ	MGP_C3HHeJ_G0005841	lincRNA gene	Chr2:61451756-61456018 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006054	lincRNA gene	Chr2:63945653-63949915 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005388	lincRNA gene	Chr2:57262093-57266253 (-)
CAST/EiJ	MGP_CASTEiJ_G0005777	lincRNA gene	Chr2:61521146-61525390 (-)
CBA/J	MGP_CBAJ_G0005826	lincRNA gene	Chr2:66369917-66374179 (-)
DBA/2J	MGP_DBA2J_G0005847	lincRNA gene	Chr2:59323940-59328210 (-)
FVB/NJ	MGP_FVBNJ_G0005873	lincRNA gene	Chr2:58845503-58849782 (-)
LP/J	MGP_LPJ_G0005926	lincRNA gene	Chr2:61955159-61959397 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005860	lincRNA gene	Chr2:68056043-68060305 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006051	lincRNA gene	Chr2:61412555-61416817 (-)
PWK/PhJ	MGP_PWKPhJ_G0005726	lincRNA gene	Chr2:59187831-59192136 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005638	lincRNA gene	Chr2:61551457-61561162 (-)
WSB/EiJ	MGP_WSBEiJ_G0005830	lincRNA gene	Chr2:61727478-61731731 (-)

Homology

• Gene Tree
  Gm13565
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13565
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087681 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087681	Ensembl Gene Model | MGI Sequence Detail	4263	C57BL/6J
transcript	ENSMUST00000133596	Ensembl | MGI Sequence Detail	700	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;