Gm13546 Gene Detail

Summary

• Symbol
  Gm13546
• Name
  predicted gene 13546

• Feature Type
  lncRNA gene
• IDs
  MGI:3649666
  NCBI Gene: 100042926
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:58054003-58067075 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 33.05 cM

Strain
Comparison

• SNPs within 2kb
  525 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649666	lncRNA gene	Chr2:58053986-58067075 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003563	antisense lncRNA gene	Chr2:57707184-57716444 (+)
A/J	MGP_AJ_G0003543	antisense lncRNA gene	Chr2:55492350-55501610 (+)
AKR/J	MGP_AKRJ_G0003522	antisense lncRNA gene	Chr2:57025551-57034811 (+)
BALB/cJ	MGP_BALBcJ_G0003532	antisense lncRNA gene	Chr2:55590151-55603213 (+)
C3H/HeJ	MGP_C3HHeJ_G0003480	antisense lncRNA gene	Chr2:57101806-57111066 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003670	antisense lncRNA gene	Chr2:59442301-59455363 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003180	antisense lncRNA gene	Chr2:53081541-53094897 (+)
CAST/EiJ	MGP_CASTEiJ_G0003443	antisense lncRNA gene	Chr2:57114940-57127960 (+)
CBA/J	MGP_CBAJ_G0003477	antisense lncRNA gene	Chr2:61658993-61668253 (+)
DBA/2J	MGP_DBA2J_G0003485	antisense lncRNA gene	Chr2:55109841-55119101 (+)
FVB/NJ	MGP_FVBNJ_G0003504	antisense lncRNA gene	Chr2:54640687-54649947 (+)
LP/J	MGP_LPJ_G0003558	antisense lncRNA gene	Chr2:57566612-57579674 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003492	antisense lncRNA gene	Chr2:63368742-63378002 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003673	antisense lncRNA gene	Chr2:57002519-57015576 (+)
PWK/PhJ	MGP_PWKPhJ_G0003398	antisense lncRNA gene	Chr2:54929855-54945350 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003343	antisense lncRNA gene	Chr2:57113685-57128378 (+)
WSB/EiJ	MGP_WSBEiJ_G0003478	antisense lncRNA gene	Chr2:57300494-57317551 (+)

Homology

• Gene Tree
  Gm13546
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13546
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000086862 (Evidence)
• NCBI Gene
  100042926

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086862	Ensembl Gene Model | MGI Sequence Detail	13073	C57BL/6J
transcript	ENSMUST00000138444	Ensembl | MGI Sequence Detail	989	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17823	Chr2:58053963-58054008 (+)	-17 bp