Gm12433 Pseudogene Detail

Summary

• Symbol
  Gm12433
• Name
  predicted gene 12433

• Feature Type
  pseudogene
• IDs
  MGI:3649669
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:98753822-98754076 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 42.89 cM

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649669	pseudogene	Chr3:98753822-98754076 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012306	pseudogene	Chr3:99888304-99888558 (+)
A/J	MGP_AJ_G0012300	pseudogene	Chr3:96723171-96723425 (+)
AKR/J	MGP_AKRJ_G0012266	pseudogene	Chr3:99048117-99048371 (+)
BALB/cJ	MGP_BALBcJ_G0012283	pseudogene	Chr3:96512031-96512285 (+)
C3H/HeJ	MGP_C3HHeJ_G0012148	pseudogene	Chr3:99389858-99390112 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012595	pseudogene	Chr3:103604895-103605149 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010978	pseudogene	Chr3:93042305-93042557 (+)
CAST/EiJ	MGP_CASTEiJ_G0011920	pseudogene	Chr3:98535613-98535867 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012182	pseudogene	Chr3:95994342-95994596 (+)
FVB/NJ	MGP_FVBNJ_G0012185	pseudogene	Chr3:93948610-93948864 (+)
LP/J	MGP_LPJ_G0012252	pseudogene	Chr3:101266289-101266543 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012189	pseudogene	Chr3:113368065-113368319 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012601	pseudogene	Chr3:98603196-98603450 (+)
PWK/PhJ	MGP_PWKPhJ_G0011765	pseudogene	Chr3:95784666-95784920 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011579	pseudogene	Chr3:96739462-96739716 (+)
WSB/EiJ	MGP_WSBEiJ_G0011950	pseudogene	Chr3:99162077-99162331 (+)

Homology

• Gene Tree
  Gm12433
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12433
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000082589 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082589	Ensembl Gene Model | MGI Sequence Detail	255	C57BL/6J
transcript	ENSMUST00000119659	Ensembl | MGI Sequence Detail	255	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;