Gm12431 Pseudogene Detail

Summary

• Symbol
  Gm12431
• Name
  predicted gene 12431

• Feature Type
  pseudogene
• IDs
  MGI:3649672
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:98750187-98750354 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 42.89 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649672	pseudogene	Chr3:98750187-98750354 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040305	pseudogene	Chr3:96719058-96733117 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040304	pseudogene	Chr3:96524155-96533786 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040906	pseudogene	Chr3:103596155-103601457 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037320	pseudogene	Chr3:92957218-92957385 (-)
CAST/EiJ	MGP_CASTEiJ_G0039016	pseudogene	Chr3:98532061-98546354 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040154	pseudogene	Chr3:101261371-101275379 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040058	pseudogene	Chr3:113364699-113378060 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041002	pseudogene	Chr3:98599560-98612292 (-)
PWK/PhJ	MGP_PWKPhJ_G0038707	pseudogene	Chr3:95780925-95793657 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038411	pseudogene	Chr3:96736014-96746501 (-)
WSB/EiJ	MGP_WSBEiJ_G0039253	pseudogene	Chr3:99158467-99173462 (-)

Homology

• Gene Tree
  Gm12431
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12431
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000082089 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082089	Ensembl Gene Model | MGI Sequence Detail	168	C57BL/6J
transcript	ENSMUST00000120693	Ensembl | MGI Sequence Detail	168	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;