Gm12644 Pseudogene Detail

Summary

• Symbol
  Gm12644
• Name
  predicted gene 12644

• Feature Type
  pseudogene
• IDs
  MGI:3649677
  NCBI Gene: 664848
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:91044919-91045524 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 42.36 cM

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649677	pseudogene	Chr4:91044902-91045976 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012759	pseudogene	Chr4:91149113-91149724 (+)
A/J	MGP_AJ_G0012745	pseudogene	Chr4:87945241-87945846 (+)
AKR/J	MGP_AKRJ_G0012716	pseudogene	Chr4:90106613-90107218 (+)
BALB/cJ	MGP_BALBcJ_G0012725	pseudogene	Chr4:88216670-88217275 (+)
C3H/HeJ	MGP_C3HHeJ_G0012584	pseudogene	Chr4:90904846-90905451 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013056	pseudogene	Chr4:94628362-94628967 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012560	pseudogene	Chr4:97510270-97510875 (+)
DBA/2J	MGP_DBA2J_G0012623	pseudogene	Chr4:87681570-87682175 (+)
FVB/NJ	MGP_FVBNJ_G0012626	pseudogene	Chr4:86610293-86610898 (+)
LP/J	MGP_LPJ_G0012696	pseudogene	Chr4:91446623-91447234 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012635	pseudogene	Chr4:102712327-102712932 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013063	pseudogene	Chr4:90285594-90286199 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012364	pseudogene	Chr4:90493297-90493902 (+)

Homology

• Gene Tree
  Gm12644
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm12644
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000081876 (Evidence)
• NCBI Gene
  664848

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081876	Ensembl Gene Model | MGI Sequence Detail	606	C57BL/6J
transcript	ENSMUST00000119935	Ensembl | MGI Sequence Detail	606	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48