Gm12297 Pseudogene Detail

Summary

• Symbol
  Gm12297
• Name
  predicted gene 12297

• Feature Type
  pseudogene
• IDs
  MGI:3649682
  NCBI Gene: 668323
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:66454433-66455411 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 40.59 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649682	pseudogene	Chr11:66454415-66455593 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010751	pseudogene	Chr11:66816038-66817016 (+)
A/J	MGP_AJ_G0010747	pseudogene	Chr11:64318454-64319432 (+)
AKR/J	MGP_AKRJ_G0010704	pseudogene	Chr11:66241243-66242221 (+)
BALB/cJ	MGP_BALBcJ_G0010720	pseudogene	Chr11:64596462-64597440 (+)
C3H/HeJ	MGP_C3HHeJ_G0010630	pseudogene	Chr11:66238116-66239094 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010996	pseudogene	Chr11:68833420-68834398 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009621	pseudogene	Chr11:61311140-61312117 (+)
CAST/EiJ	MGP_CASTEiJ_G0010453	pseudogene	Chr11:66474287-66475262 (+)
CBA/J	MGP_CBAJ_G0010604	pseudogene	Chr11:71850893-71851871 (+)
DBA/2J	MGP_DBA2J_G0010644	pseudogene	Chr11:63864990-63865968 (+)
FVB/NJ	MGP_FVBNJ_G0010658	pseudogene	Chr11:63530074-63531052 (+)
LP/J	MGP_LPJ_G0010732	pseudogene	Chr11:67352046-67353024 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010634	pseudogene	Chr11:72719268-72720246 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010970	pseudogene	Chr11:66466531-66467509 (+)
PWK/PhJ	MGP_PWKPhJ_G0010347	pseudogene	Chr11:64508434-64509412 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010157	pseudogene	Chr11:66319741-66320716 (+)
WSB/EiJ	MGP_WSBEiJ_G0010511	pseudogene	Chr11:66087847-66088825 (+)

Homology

• Gene Tree
  Gm12297
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12297
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080978 (Evidence)
• NCBI Gene
  668323

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080978	Ensembl Gene Model | MGI Sequence Detail	979	C57BL/6J
transcript	ENSMUST00000121380	Ensembl | MGI Sequence Detail	979	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12297:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3521	Chr11:66454361-66454366 (+)	-69 bp