Gm13077 Pseudogene Detail

Summary

• Symbol
  Gm13077
• Name
  predicted gene 13077
• Synonyms
  Gm20377

• Feature Type
  pseudogene
• IDs
  MGI:3649703
  NCBI Gene: 100504731
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:152241464-152241947 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 82.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649703	pseudogene	Chr4:152240506-152242021 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011463	pseudogene	Chr19:3185826-3186655 (+)
A/J	MGP_AJ_G0012931	pseudogene	Chr4:149692118-149692652 (-)
AKR/J	MGP_AKRJ_G0012898	pseudogene	Chr4:153760389-153760872 (-)
BALB/cJ	MGP_BALBcJ_G0012910	pseudogene	Chr4:150179818-150180301 (-)
C3H/HeJ	MGP_C3HHeJ_G0012763	pseudogene	Chr4:154344428-154344911 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013266	pseudogene	Chr4:161856204-161856687 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012732	pseudogene	Chr4:166667265-166667748 (-)
DBA/2J	MGP_DBA2J_G0012806	pseudogene	Chr4:149759657-149760140 (-)
FVB/NJ	MGP_FVBNJ_G0012810	pseudogene	Chr4:148919835-148920318 (-)
LP/J	MGP_LPJ_G0012875	pseudogene	Chr4:156176329-156176812 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012825	pseudogene	Chr4:169709147-169709630 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013267	pseudogene	Chr4:154318137-154318620 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13077
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm13077
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000081544 (Evidence)
• NCBI Gene
  100504731

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081544	Ensembl Gene Model | MGI Sequence Detail	484	C57BL/6J
transcript	ENSMUST00000121941	Ensembl | MGI Sequence Detail	484	Not Applicable

Other
Accession IDs

MGI:5012562

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:121726 Bagchi A, et al., CHD5 is a tumor suppressor at human 1p36. Cell. 2007 Feb 9;128(3):459-75
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16