Gm11860 Pseudogene Detail

Summary

• Symbol
  Gm11860
• Name
  predicted gene 11860

• Feature Type
  pseudogene
• IDs
  MGI:3649715
  NCBI Gene: 100417900
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:18009218-18010227 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 7.09 cM

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649715	pseudogene	Chr4:18009036-18010295 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012537	pseudogene	Chr4:14975960-14976969 (-)
A/J	MGP_AJ_G0012530	pseudogene	Chr4:14557558-14558567 (-)
AKR/J	MGP_AKRJ_G0012496	pseudogene	Chr4:14866621-14867630 (-)
BALB/cJ	MGP_BALBcJ_G0012516	pseudogene	Chr4:14521764-14522773 (-)
C3H/HeJ	MGP_C3HHeJ_G0012376	pseudogene	Chr4:14993047-14994056 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012829	pseudogene	Chr4:15568067-15569076 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011169	pseudogene	Chr4:13525157-13526164 (-)
CAST/EiJ	MGP_CASTEiJ_G0012138	pseudogene	Chr4:14788219-14789228 (-)
CBA/J	MGP_CBAJ_G0012355	pseudogene	Chr4:16015729-16016738 (-)
DBA/2J	MGP_DBA2J_G0012409	pseudogene	Chr4:14357884-14358893 (-)
FVB/NJ	MGP_FVBNJ_G0012413	pseudogene	Chr4:14135627-14136636 (-)
LP/J	MGP_LPJ_G0012483	pseudogene	Chr4:15018051-15019060 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012420	pseudogene	Chr4:16708724-16709733 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012831	pseudogene	Chr4:14760096-14761105 (-)
PWK/PhJ	MGP_PWKPhJ_G0011969	pseudogene	Chr4:14323926-14324935 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011789	pseudogene	Chr4:14673352-14674359 (-)
WSB/EiJ	MGP_WSBEiJ_G0012162	pseudogene	Chr4:14843550-14844559 (-)

Homology

• Gene Tree
  Gm11860
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083387 (Evidence)
• NCBI Gene
  100417900

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083387	Ensembl Gene Model | MGI Sequence Detail	1010	C57BL/6J
transcript	ENSMUST00000122346	Ensembl | MGI Sequence Detail	1010	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;