Gm12242 Pseudogene Detail

Summary

• Symbol
  Gm12242
• Name
  predicted gene 12242

• Feature Type
  pseudogene
• IDs
  MGI:3649717
  NCBI Gene: 667878
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:57339933-57340670 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 35.27 cM

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649717	pseudogene	Chr11:57339907-57340708 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010720	pseudogene	Chr11:57047946-57049842 (+)
A/J	MGP_AJ_G0010718	pseudogene	Chr11:54921582-54922319 (+)
AKR/J	MGP_AKRJ_G0010676	pseudogene	Chr11:56721262-56722898 (+)
BALB/cJ	MGP_BALBcJ_G0010688	pseudogene	Chr11:55258494-55259231 (+)
C3H/HeJ	MGP_C3HHeJ_G0010602	pseudogene	Chr11:56642972-56643709 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010965	pseudogene	Chr11:58800907-58803200 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009596	pseudogene	Chr11:52290928-52291668 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010577	pseudogene	Chr11:61521158-61521895 (+)
DBA/2J	MGP_DBA2J_G0010614	pseudogene	Chr11:54569532-54570269 (+)
FVB/NJ	MGP_FVBNJ_G0010631	pseudogene	Chr11:54249544-54250281 (+)
LP/J	MGP_LPJ_G0010701	pseudogene	Chr11:57543689-57544426 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010605	pseudogene	Chr11:62666494-62667231 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010938	pseudogene	Chr11:56733814-56734551 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010483	pseudogene	Chr11:56383718-56386028 (+)

Homology

• Gene Tree
  Gm12242
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12242
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000082476 (Evidence)
• NCBI Gene
  667878

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082476	Ensembl Gene Model | MGI Sequence Detail	738	C57BL/6J
transcript	ENSMUST00000118824	Ensembl | MGI Sequence Detail	738	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6