Gm13729 Pseudogene Detail

Summary

• Symbol
  Gm13729
• Name
  predicted gene 13729

• Feature Type
  pseudogene
• IDs
  MGI:3649730
  NCBI Gene: 668424
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:87135083-87135488 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.86 cM

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649730	pseudogene	Chr2:87135083-87135810 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011746	pseudogene	Chr2:88336130-88336535 (+)
A/J	MGP_AJ_G0011741	pseudogene	Chr2:84797121-84797535 (+)
AKR/J	MGP_AKRJ_G0011707	pseudogene	Chr2:87122884-87123298 (+)
BALB/cJ	MGP_BALBcJ_G0011719	pseudogene	Chr2:85009145-85009559 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012017	pseudogene	Chr2:91269673-91270078 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010524	pseudogene	Chr2:81561365-81561772 (+)
CAST/EiJ	MGP_CASTEiJ_G0011394	pseudogene	Chr2:87835296-87835701 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0011631	pseudogene	Chr2:84413712-84414126 (+)
FVB/NJ	MGP_FVBNJ_G0011637	pseudogene	Chr2:83483296-83483710 (+)
LP/J	MGP_LPJ_G0011702	pseudogene	Chr2:88342108-88342513 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011638	pseudogene	Chr2:97048268-97048682 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012012	pseudogene	Chr2:87220566-87220971 (+)
PWK/PhJ	MGP_PWKPhJ_G0011244	pseudogene	Chr2:84285926-84286332 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011068	pseudogene	Chr2:87242579-87242984 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13729
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13729
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000083550 (Evidence)
• NCBI Gene
  668424

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083550	Ensembl Gene Model | MGI Sequence Detail	406	C57BL/6J
transcript	ENSMUST00000120328	Ensembl | MGI Sequence Detail	406	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087