Gm13808 Pseudogene Detail

Summary

• Symbol
  Gm13808
• Name
  predicted gene 13808

• Feature Type
  pseudogene
• IDs
  MGI:3649745
  NCBI Gene: 668702
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:99889278-99889461 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 53.37 cM

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649745	pseudogene	Chr2:99888847-99889828 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011783	pseudogene	Chr2:101781843-101782026 (+)
A/J	MGP_AJ_G0011775	pseudogene	Chr2:97685698-97685881 (+)
AKR/J	MGP_AKRJ_G0011744	pseudogene	Chr2:100291234-100291417 (+)
BALB/cJ	MGP_BALBcJ_G0011754	pseudogene	Chr2:97948893-97949076 (+)
C3H/HeJ	MGP_C3HHeJ_G0011640	pseudogene	Chr2:100655000-100655183 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012055	pseudogene	Chr2:105297157-105297340 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010550	pseudogene	Chr2:93623247-93623430 (+)
CAST/EiJ	MGP_CASTEiJ_G0011427	pseudogene	Chr2:101225893-101226076 (+)
CBA/J	MGP_CBAJ_G0011616	pseudogene	Chr2:108935564-108935747 (+)
DBA/2J	MGP_DBA2J_G0011666	pseudogene	Chr2:97241157-97241340 (+)
FVB/NJ	MGP_FVBNJ_G0011671	pseudogene	Chr2:96286473-96286656 (+)
LP/J	MGP_LPJ_G0011736	pseudogene	Chr2:101960701-101960884 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011674	pseudogene	Chr2:112860457-112860640 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012049	pseudogene	Chr2:100491613-100491796 (+)
PWK/PhJ	MGP_PWKPhJ_G0011277	pseudogene	Chr2:96899028-96899211 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011100	pseudogene	Chr2:99860478-99860662 (+)
WSB/EiJ	MGP_WSBEiJ_G0011451	pseudogene	Chr2:101148262-101148445 (+)

Homology

• Gene Tree
  Gm13808
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm13808
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082259 (Evidence)
• NCBI Gene
  668702

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082259	Ensembl Gene Model | MGI Sequence Detail	184	C57BL/6J
transcript	ENSMUST00000121353	Ensembl | MGI Sequence Detail	184	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087