Hspd1-ps4 Pseudogene Detail

Summary

• Symbol
  Hspd1-ps4
• Name
  heat shock protein 1 (chaperonin), pseudogene 4
• Synonyms
  Gm12725

• Feature Type
  pseudogene
• IDs
  MGI:3649750
  NCBI Gene: 384039
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:105993308-105994975 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 49.41 cM

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649750	pseudogene	Chr4:105992911-105995029 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013101	pseudogene	Chr4:110626588-110628255 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009987	pseudogene	Chr14:91528034-91530637 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013112	pseudogene	Chr4:105693367-105695034 (-)
PWK/PhJ	MGP_PWKPhJ_G0010703	pseudogene	Chr14:91057865-91059509 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010524	pseudogene	Chr14:92902097-92903736 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Hspd1-ps4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Hspd1-ps4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000081189 (Evidence)
• NCBI Gene
  384039

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081189	Ensembl Gene Model | MGI Sequence Detail	1668	C57BL/6J
transcript	ENSMUST00000121815	Ensembl | MGI Sequence Detail	1668	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;