Gm12724 Gene Detail

Summary

• Symbol
  Gm12724
• Name
  predicted gene 12724

• Feature Type
  lncRNA gene
• IDs
  MGI:3649755
  NCBI Gene: 105244641
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:106098413-106147223 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 49.41 cM

Strain
Comparison

• SNPs within 2kb
  1602 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649755	lncRNA gene	Chr4:106094319-106147744 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015564	unclassified non-coding RNA gene	Chr4:106842124-106898513 (+)
A/J	MGP_AJ_G0015541	unclassified non-coding RNA gene	Chr4:103038842-103092577 (+)
AKR/J	MGP_AKRJ_G0015505	unclassified non-coding RNA gene	Chr4:105532337-105582665 (+)
BALB/cJ	MGP_BALBcJ_G0015503	unclassified non-coding RNA gene	Chr4:103231546-103279370 (+)
C3H/HeJ	MGP_C3HHeJ_G0015325	unclassified non-coding RNA gene	Chr4:106302699-106350416 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015956	unclassified non-coding RNA gene	Chr4:110729100-110779479 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013692	unclassified non-coding RNA gene	Chr4:98314282-98358081 (+)
CAST/EiJ	MGP_CASTEiJ_G0014880	unclassified non-coding RNA gene	Chr4:104088022-104144054 (+)
CBA/J	MGP_CBAJ_G0015306	unclassified non-coding RNA gene	Chr4:114289688-114342699 (+)
DBA/2J	MGP_DBA2J_G0015400	unclassified non-coding RNA gene	Chr4:102661028-102710307 (+)
FVB/NJ	MGP_FVBNJ_G0015407	unclassified non-coding RNA gene	Chr4:101509393-101563968 (+)
LP/J	MGP_LPJ_G0015480	unclassified non-coding RNA gene	Chr4:107039188-107094450 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015430	unclassified non-coding RNA gene	Chr4:119636461-119687582 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015998	unclassified non-coding RNA gene	Chr4:105793835-105845211 (+)
PWK/PhJ	MGP_PWKPhJ_G0014665	unclassified non-coding RNA gene	Chr4:100888420-100934961 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014454	unclassified non-coding RNA gene	Chr4:103183614-103228206 (+)
WSB/EiJ	MGP_WSBEiJ_G0014985	unclassified non-coding RNA gene	Chr4:105967247-106019610 (+)

Homology

• Gene Tree
  Gm12724
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12724
• Find Mice (IMSR)
  17 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086249 (Evidence)
• NCBI Gene
  105244641

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086249	Ensembl Gene Model | MGI Sequence Detail	48811	C57BL/6J
transcript	ENSMUST00000140196	Ensembl | MGI Sequence Detail	665	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12