Gm11821 Pseudogene Detail

Summary

• Symbol
  Gm11821
• Name
  predicted gene 11821

• Feature Type
  pseudogene
• IDs
  MGI:3649777
  NCBI Gene: 634834
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:11400346-11401324 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 5.11 cM

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649777	pseudogene	Chr4:11400247-11401916 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012511	pseudogene	Chr4:8057257-8059880 (+)
A/J	MGP_AJ_G0012505	pseudogene	Chr4:7935871-7936849 (+)
AKR/J	MGP_AKRJ_G0011165	pseudogene	Chr15:93724047-93725025 (-)
BALB/cJ	MGP_BALBcJ_G0012488	pseudogene	Chr4:7849574-7850552 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012803	pseudogene	Chr4:8468996-8471003 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010052	pseudogene	Chr15:87033723-87049480 (-)
CAST/EiJ	MGP_CASTEiJ_G0012118	pseudogene	Chr4:8018996-8019828 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012384	pseudogene	Chr4:7808621-7809578 (+)
FVB/NJ	MGP_FVBNJ_G0012385	pseudogene	Chr4:7636096-7637511 (+)
LP/J	MGP_LPJ_G0012458	pseudogene	Chr4:8142879-8143857 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012393	pseudogene	Chr4:8885916-8886893 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012805	pseudogene	Chr4:8024768-8025746 (+)
PWK/PhJ	MGP_PWKPhJ_G0011950	pseudogene	Chr4:7812453-7813480 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010594	pseudogene	Chr15:93528853-93548460 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm11821
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000081884 (Evidence)
• NCBI Gene
  634834

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081884	Ensembl Gene Model | MGI Sequence Detail	979	C57BL/6J
transcript	ENSMUST00000117335	Ensembl | MGI Sequence Detail	979	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;